Factsheet for Os12t0597600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

cytosol: 19685898

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G071000.1	Wheat	nucleus	61.45	19.65
TraesCS5B01G066800.1	Wheat	nucleus	61.45	19.62
TraesCS5A01G059500.1	Wheat	cytosol	60.84	19.42
EES16283	Sorghum	cytosol	57.23	18.66
Solyc06g084010.2.1	Tomato	nucleus	35.54	18.27
Zm00001d030968_P006	Maize	extracellular	55.42	18.11
Os03t0627500-01	Rice	cytosol	49.4	16.08
GSMUA_Achr7P01590_001	Banana	nucleus	34.94	13.18
CDY64706	Canola	nucleus	31.33	12.87
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	31.93	11.96
KRG97000	Soybean	nucleus	31.93	11.88
PGSC0003DMT400051668	Potato	cytosol	35.54	11.52
VIT_07s0141g00800.t01	Wine grape	cytosol	29.52	11.32
KRH71306	Soybean	nucleus	33.73	11.31
KRH67322	Soybean	nucleus	33.13	10.4
VIT_14s0081g00440.t01	Wine grape	cytosol	31.93	10.37
KRG95633	Soybean	nucleus	33.13	10.24
AT3G04610.2	Thale cress	cytosol	35.54	10.23
PGSC0003DMT400051262	Potato	nucleus	30.72	10.16
Solyc09g066120.2.1	Tomato	nucleus	29.52	9.96
CDX74180	Canola	cytosol	33.73	9.95
KRH32136	Soybean	cytosol	33.73	9.91
CDY40663	Canola	cytosol	33.13	9.77
Os02t0125500-00	Rice	cytosol	22.89	8.66
Os10t0564000-01	Rice	cytosol	23.49	8.52
Bra001111.1-P	Field mustard	cytosol	19.28	8.21
Os10t0414700-01	Rice	nucleus	21.69	5.78
Os03t0376800-02	Rice	nucleus	12.05	3.69
Os06t0342500-01	Rice	cytosol	12.05	3.02
Os10t0495000-01	Rice	nucleus	13.25	2.89
Os09t0498600-01	Rice	plastid	7.23	1.95
Solyc01g097010.2.1	Tomato	nucleus	1.2	0.55
GSMUA_Achr5P03200_001	Banana	cytosol	0.6	0.38
Solyc06g084000.2.1	Tomato	nucleus	0.0	0.0
Os08t0200300-02	Rice	plastid	0.0	0.0
Os07t0439100-01	Rice	cytosol	0.0	0.0
Os01t0235800-01	Rice	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Os12t0597600-01	EnsemblPlantsGene:Os12g0597600	Gene3D:3.30.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288	PANTHER:PTHR10288:SF155
PFAM:PF00013	PFscan:PS50084	ProteinID:BAT17935.1	SUPFAM:SSF54791	UniParc:UPI000393AFE5	UniProt:A0A0P0YCA1
MapMan:35.1	:	:	:	:	:

Description

Similar to KH domain containing protein. (Os12t0597600-01)

Coordinates

chr12:+:25091764..25098242

Molecular Weight (calculated)

18181.7 Da

IEP (calculated)

3.993

GRAVY (calculated)

-0.916

Length

166 amino acids

Sequence
(BLAST)

001: MDGNIENPAE DMSGIASNLD NEEQAIPLSD VPEQYKEDPE NTYDEETKDS SYEESGIPYN EDQVNINDGN VGHQHEEDQA IPSEEGHAYG GEAQGEQQAN
101: AVTDEKKWPG WPGESVFRIL VPAQKVGAVI GRKGEFIKKM CEESRARIKV LDGPPGVPDR AVLTAV

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.