Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001111.1-P | Field mustard | cytosol | 65.56 | 61.03 |
| KRH68752 | Soybean | cytoskeleton, cytosol, nucleus | 72.73 | 59.59 |
| KRG97000 | Soybean | nucleus | 73.0 | 59.42 |
| GSMUA_Achr5P03200_001 | Banana | cytosol | 42.7 | 58.49 |
| Solyc06g084000.2.1 | Tomato | nucleus | 37.19 | 56.96 |
| VIT_14s0081g00440.t01 | Wine grape | cytosol | 73.28 | 52.05 |
| GSMUA_Achr7P01590_001 | Banana | nucleus | 60.61 | 50.0 |
| CDY40663 | Canola | cytosol | 66.12 | 42.63 |
| CDX74180 | Canola | cytosol | 65.84 | 42.45 |
| AT3G04610.2 | Thale cress | cytosol | 66.94 | 42.11 |
| Os03t0627500-01 | Rice | cytosol | 57.58 | 40.98 |
| TraesCS5D01G071000.1 | Wheat | nucleus | 57.3 | 40.08 |
| Solyc09g066120.2.1 | Tomato | nucleus | 54.27 | 40.04 |
| TraesCS5B01G066800.1 | Wheat | nucleus | 57.3 | 40.0 |
| TraesCS5A01G059500.1 | Wheat | cytosol | 57.02 | 39.81 |
| Zm00001d030968_P006 | Maize | extracellular | 55.65 | 39.76 |
| TraesCS4B01G069700.1 | Wheat | nucleus | 55.65 | 39.53 |
| CDY64706 | Canola | nucleus | 43.8 | 39.36 |
| EES16283 | Sorghum | cytosol | 55.1 | 39.29 |
| TraesCS4D01G068400.1 | Wheat | nucleus | 55.1 | 38.91 |
| TraesCS4A01G245800.1 | Wheat | nucleus | 55.1 | 38.1 |
| HORVU4Hr1G011610.11 | Barley | cytoskeleton, cytosol, nucleus | 55.37 | 37.08 |
| OQU91315 | Sorghum | plastid | 42.15 | 31.48 |
| Zm00001d013712_P003 | Maize | cytosol, plastid, vacuole | 54.82 | 30.29 |
| Solyc07g008490.2.1 | Tomato | nucleus | 38.84 | 29.25 |
| HORVU1Hr1G036280.1 | Barley | cytosol | 25.62 | 22.68 |
| Solyc05g041740.1.1 | Tomato | plastid | 12.95 | 22.38 |
| Solyc05g042180.1.1 | Tomato | plastid | 16.53 | 21.98 |
| EER94248 | Sorghum | nucleus | 35.26 | 21.77 |
| TraesCS1A01G136600.1 | Wheat | cytosol, mitochondrion, nucleus | 34.44 | 20.87 |
| TraesCS1B01G155000.1 | Wheat | cytosol, mitochondrion, nucleus | 34.16 | 20.7 |
| TraesCS1D01G134700.1 | Wheat | cytosol | 34.16 | 20.67 |
| Zm00001d014180_P004 | Maize | cytosol | 34.71 | 19.47 |
| Os10t0414700-01 | Rice | nucleus | 33.06 | 19.26 |
| Zm00001d003290_P002 | Maize | mitochondrion | 11.85 | 18.78 |
| Solyc08g074330.1.1 | Tomato | plastid | 11.29 | 18.06 |
| Solyc06g084010.2.1 | Tomato | nucleus | 15.98 | 17.96 |
| Solyc05g043210.1.1 | Tomato | plastid | 12.4 | 17.79 |
| HORVU1Hr1G036300.1 | Barley | cytosol | 8.82 | 17.58 |
| Solyc05g043200.1.1 | Tomato | nucleus, peroxisome, plastid | 13.5 | 15.31 |
| Solyc05g007810.2.1 | Tomato | nucleus | 19.56 | 13.35 |
| Solyc04g077060.2.1 | Tomato | nucleus | 17.08 | 13.11 |
| Solyc02g088120.2.1 | Tomato | nucleus | 18.73 | 12.95 |
| Zm00001d010815_P001 | Maize | mitochondrion | 11.85 | 12.29 |
| Solyc08g048500.2.1 | Tomato | nucleus | 20.66 | 12.16 |
| Solyc01g090480.2.1 | Tomato | nucleus | 14.6 | 11.94 |
| Solyc02g067210.2.1 | Tomato | nucleus | 20.11 | 11.85 |
| Solyc12g055790.1.1 | Tomato | nucleus | 7.99 | 11.65 |
| Solyc03g082980.2.1 | Tomato | nucleus | 19.28 | 10.48 |
| Solyc03g034200.2.1 | Tomato | nucleus | 20.39 | 10.47 |
| Solyc01g106020.2.1 | Tomato | plastid | 17.63 | 9.91 |
| Solyc11g010840.1.1 | Tomato | plastid | 15.7 | 9.3 |
| Solyc12g055780.1.1 | Tomato | cytosol, nucleus | 7.71 | 7.57 |
| Os12t0597600-01 | Rice | cytosol | 0.55 | 1.2 |
Protein Annotations
| Gene3D:3.30.1370.10 | Gene3D:3.30.310.210 | MapMan:35.1 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009911 |
| InterPro:IPR036612 | UniProt:K4B089 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | PFAM:PF00013 |
| PFscan:PS50084 | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF224 | SMART:SM00322 | SUPFAM:SSF54791 | EnsemblPlantsGene:Solyc01g097010.2 |
| EnsemblPlants:Solyc01g097010.2.1 | UniParc:UPI0002767E32 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr1:+:87973382..87999965
Molecular Weight (calculated)
38530.8 Da
IEP (calculated)
5.938
GRAVY (calculated)
-0.365
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLQGLLREH EVMISAREEP ESSHPPAIDG LLRVHRRVVD GLENDSSHPP PAVAGKVSTK LLVPASQAGS LIGKQGTTVK SIQEASSCIV RVLGTEDLPM
101: FALQDDRIVE VVGEPVGVHK AVELIASHLR KFLVDRGIIP VFEMQMQMPP NPPAEHMPPP QTWGPPPQAF PQSAAGGPGY GNSPHFMPPS RQHDNYYPPA
201: DMPPPMEKQP HQGISAYGRE APMSMHSSSN NPAAPSLITQ ITQQMQIPLA FADAVIGTNG ASISYIRRVS GATVTIQETK GVPGEMTVEI NGTASQVQTA
301: QQLIQNFMAD AGAPQPQTGP PADQGYNPYG APPPSMYSSA PSNAGVPGQS GGYGSMYGNN YGY
101: FALQDDRIVE VVGEPVGVHK AVELIASHLR KFLVDRGIIP VFEMQMQMPP NPPAEHMPPP QTWGPPPQAF PQSAAGGPGY GNSPHFMPPS RQHDNYYPPA
201: DMPPPMEKQP HQGISAYGRE APMSMHSSSN NPAAPSLITQ ITQQMQIPLA FADAVIGTNG ASISYIRRVS GATVTIQETK GVPGEMTVEI NGTASQVQTA
301: QQLIQNFMAD AGAPQPQTGP PADQGYNPYG APPPSMYSSA PSNAGVPGQS GGYGSMYGNN YGY
001: MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVDD QLEYHQYQLQ DQANEDVQDH SQDDLQYQPQ NQEQFQLQDE
101: AHDQAQYQAQ GDVQDHNGDE VQDKVEDEEG IPEHLESLQK SEPEEDATVG GEEKRWPGWP GETVFRMLVP AQKVGSIIGR KGDVIKKIVE ETRARIKILD
201: GPPGTTERAV MVSGKEEPES SLPPSMDGLL RVHMRIVDGL DGEASQAPPP SKVSTRLLVP ASQAGSLIGK QGGTVKAIQE ASACIVRVLG SEDLPVFALQ
301: DDRVVEVVGE PTSVHRALEL IASHLRKFLV DRSIIPFFEN QMQKPTRQMD HMPPPHQSWG PPQGHAPSVG GGGYGHNPPP YMQPPPRHDS YYPPPEMRQP
401: PMEKQPHQGI SAYGREPPMN VHVSSAPPMV AQQVTQQMQI PLSYADAVIG TSGSNISYTR RLSGATVTIQ ETRGVPGEMT VEVSGTGSQV QTAVQLIQNF
501: MAEAGAPAPA QPQTVAPEQQ GYNPYATHGS VYAAAPTNPP GGYATDYSSG YGY
101: AHDQAQYQAQ GDVQDHNGDE VQDKVEDEEG IPEHLESLQK SEPEEDATVG GEEKRWPGWP GETVFRMLVP AQKVGSIIGR KGDVIKKIVE ETRARIKILD
201: GPPGTTERAV MVSGKEEPES SLPPSMDGLL RVHMRIVDGL DGEASQAPPP SKVSTRLLVP ASQAGSLIGK QGGTVKAIQE ASACIVRVLG SEDLPVFALQ
301: DDRVVEVVGE PTSVHRALEL IASHLRKFLV DRSIIPFFEN QMQKPTRQMD HMPPPHQSWG PPQGHAPSVG GGGYGHNPPP YMQPPPRHDS YYPPPEMRQP
401: PMEKQPHQGI SAYGREPPMN VHVSSAPPMV AQQVTQQMQI PLSYADAVIG TSGSNISYTR RLSGATVTIQ ETRGVPGEMT VEVSGTGSQV QTAVQLIQNF
501: MAEAGAPAPA QPQTVAPEQQ GYNPYATHGS VYAAAPTNPP GGYATDYSSG YGY
Arabidopsis Description
FLKFlowering locus K homology domain [Source:UniProtKB/Swiss-Prot;Acc:Q9SR13]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.