Factsheet for HORVU4Hr1G011610.11

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

mitochondrion 1
cytosol 1
cytoskeleton 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, nucleus
Any Predictor:	cytoskeleton, cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
WoLF PSORT:	cytoskeleton
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G068400.1	Wheat	nucleus	87.82	92.61
TraesCS4B01G069700.1	Wheat	nucleus	87.27	92.56
TraesCS4A01G245800.1	Wheat	nucleus	87.27	90.1
Os03t0627500-01	Rice	cytosol	72.88	77.45
OQU91315	Sorghum	plastid	57.2	63.79
GSMUA_Achr7P01590_001	Banana	nucleus	50.74	62.5
GSMUA_Achr5P03200_001	Banana	cytosol	29.34	60.0
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	70.11	57.84
Bra001111.1-P	Field mustard	cytosol	41.33	57.44
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	45.76	55.98
Solyc01g097010.2.1	Tomato	nucleus	37.08	55.37
KRG97000	Soybean	nucleus	45.39	55.16
VIT_14s0081g00440.t01	Wine grape	cytosol	49.82	52.84
VIT_07s0141g00800.t01	Wine grape	cytosol	41.7	52.19
Solyc06g084000.2.1	Tomato	nucleus	21.77	49.79
Solyc09g066120.2.1	Tomato	nucleus	42.8	47.15
PGSC0003DMT400051262	Potato	nucleus	43.54	47.01
PGSC0003DMT400051668	Potato	cytosol	44.28	46.88
CDY64706	Canola	nucleus	33.95	45.54
KRH67322	Soybean	nucleus	43.73	44.8
KRG95633	Soybean	nucleus	44.28	44.69
KRH71306	Soybean	nucleus	40.59	44.44
CDX74180	Canola	cytosol	45.39	43.69
CDY40663	Canola	cytosol	45.2	43.52
AT3G04610.2	Thale cress	cytosol	46.31	43.5
KRH32136	Soybean	cytosol	43.91	42.12
HORVU1Hr1G036300.1	Barley	cytosol	11.99	35.71
HORVU1Hr1G055480.1	Barley	plastid	32.29	34.86
Solyc06g084010.2.1	Tomato	nucleus	19.93	33.44
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	25.28	27.68
HORVU1Hr1G036280.1	Barley	cytosol	16.79	22.2
HORVU4Hr1G049680.1	Barley	nucleus	18.82	17.53
HORVU7Hr1G082230.1	Barley	nucleus	16.97	14.7
HORVU5Hr1G121900.1	Barley	nucleus	16.61	14.24
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	16.24	13.92
HORVU3Hr1G057270.16	Barley	plastid	16.61	11.6
HORVU5Hr1G075110.3	Barley	mitochondrion	12.73	10.71
HORVU1Hr1G043680.7	Barley	nucleus	16.05	10.67

Protein Annotations

EnsemblPlants:HORVU4Hr1G011610.11	EnsemblPlantsGene:HORVU4Hr1G011610	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288	PANTHER:PTHR10288:SF155	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322
SUPFAM:SSF54791	UniParc:UPI000B485F3D	UniProt:A0A287N861	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrchr4H:-:36247949..36256167

Molecular Weight (calculated)

58538.6 Da

IEP (calculated)

4.706

GRAVY (calculated)

-0.611

Length

542 amino acids

Sequence
(BLAST)

001: MGAFEVGLGG KGAVPMVDWT WNPVAVCLKI MDEENFTEHG IDELPQNLYD QERLNSYDNT EQYNEEPGNP YNEEEPANQY EGAGNAYNEV QANLLSEEPE
101: TQYNDEPVSP CQEENAYNGQ VKQQESLQVE GEDKRWPGWP GDSVFRILVP AQKVGAIIGR KGEFIKKMCE QSKARIKILD GPPGVTERAV IISAKDEPDE
201: PISPAMDGLL RIHKRITDGS DGEFGQPQRG ASNVGPTRLL VPASQAGSLI GKQGATIKSI QDSSKSVVRI VENVPPVALN DDRVVEIQGE PLGVHKAVEL
301: IANHLRKFLV DHSILPLFEQ QMKMHSVQRE QPMTAPQHWT PTQPWLPPPN LPPVGPGYGG NPQFMPPRPQ DNYYPRPDVP PMEKQPHYGI SAYGREAPPS
401: GTSGNQPPLH VASQVHNMQI PLSYADAVIG AAGASISYIR RQSGAAVTIQ ESRGAPGEMT VEIIGSASQV QTAQQLIQNF MAEAAPQTRL PASNPPAPPV
501: DSGYGSYPPP PYGAPPTGAG AGPAPHNGGG YGGGSYHPGY GY

Best Arabidopsis Sequence Match ( AT3G04610.4 )
(BLAST)

001: MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVDD QLEYHQYQLQ DQANEDVQDH SQDDLQYQPQ NQEQFQLQDE
101: AHDQAQYQAQ GDVQDHNGDE VQDKVEDEEG IPEHLESLQK SEPEEDATVG GEEKRWPGWP GETVFRMLVP AQKVGSIIGR KGDVIKKIVE ETRARIKILD
201: GPPGTTERAV MVSGKEEPES SLPPSMDGLL RVHMRIVDGL DGEASQAPPP SKVSTRLLVP ASQAGSLIGK QGGTVKAIQE ASACIVRVLG SEDLPVFALQ
301: DDRVVEVVGE PTSVHRALEL IASHLRKFLV DRSIIPFFEN QMQKPTRQMD HMPPPHQSWG PPQGHAPSVG GGGYGHNPPP YMQPPPRHDS YYPPPEMRQP
401: PMEKQPHQGI SAYGREPPMN VHVSSAPPMV AQQVTQQMQI PLSYADAVIG TSGSNISYTR RLSGATVTIQ ETRGVPGEMT VEVSGTGSQV QTAVQLIQNF
501: MAEAGAPAPA QPQTVAPEQQ GYNPYATHGS VYAAAPTNPP GGYATDYSSG YGY

Arabidopsis Description

FLKFlowering locus K homology domain [Source:UniProtKB/Swiss-Prot;Acc:Q9SR13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.