Factsheet for PGSC0003DMT400051668

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g084000.2.1	Tomato	nucleus	44.92	97.05
Solyc06g084010.2.1	Tomato	nucleus	45.7	72.45
PGSC0003DMT400051262	Potato	nucleus	66.41	67.73
VIT_07s0141g00800.t01	Wine grape	cytosol	53.32	63.05
GSMUA_Achr7P01590_001	Banana	nucleus	50.39	58.64
KRH67322	Soybean	nucleus	57.03	55.2
KRG95633	Soybean	nucleus	57.81	55.12
KRH71306	Soybean	nucleus	51.76	53.54
GSMUA_Achr5P03200_001	Banana	cytosol	27.54	53.21
KRH32136	Soybean	cytosol	57.03	51.68
Os03t0627500-01	Rice	cytosol	48.83	49.02
TraesCS4B01G069700.1	Wheat	nucleus	48.05	48.14
TraesCS4D01G068400.1	Wheat	nucleus	47.85	47.67
TraesCS4A01G245800.1	Wheat	nucleus	48.24	47.05
TraesCS5D01G071000.1	Wheat	nucleus	47.66	47.01
TraesCS5B01G066800.1	Wheat	nucleus	47.66	46.92
EES16283	Sorghum	cytosol	46.48	46.76
TraesCS5A01G059500.1	Wheat	cytosol	47.46	46.73
Zm00001d030968_P006	Maize	extracellular	46.29	46.65
HORVU4Hr1G011610.11	Barley	cytoskeleton, cytosol, nucleus	46.88	44.28
OQU91315	Sorghum	plastid	39.26	41.36
HORVU1Hr1G036300.1	Barley	cytosol	13.28	37.36
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	46.29	36.07
Os12t0597600-01	Rice	cytosol	11.52	35.54
PGSC0003DMT400076105	Potato	plastid	30.86	34.2
PGSC0003DMT400038635	Potato	cytosol	8.98	31.51
PGSC0003DMT400046406	Potato	cytosol	35.16	30.51
Zm00001d003290_P002	Maize	mitochondrion	12.5	27.95
TraesCS1D01G134700.1	Wheat	cytosol	30.27	25.83
TraesCS1B01G155000.1	Wheat	cytosol, mitochondrion, nucleus	30.08	25.71
TraesCS1A01G136600.1	Wheat	cytosol, mitochondrion, nucleus	30.08	25.71
EER94248	Sorghum	nucleus	29.3	25.51
Os10t0414700-01	Rice	nucleus	28.91	23.76
Zm00001d014180_P004	Maize	cytosol	29.49	23.34
PGSC0003DMT400087680	Potato	plastid	10.55	21.69
HORVU1Hr1G036280.1	Barley	cytosol	16.8	20.98
PGSC0003DMT400066836	Potato	nucleus, plastid	16.99	19.55
Zm00001d010815_P001	Maize	mitochondrion	13.28	19.43
PGSC0003DMT400003371	Potato	nucleus	20.12	19.04
PGSC0003DMT400047374	Potato	nucleus	19.73	18.95
PGSC0003DMT400064701	Potato	nucleus	19.73	18.2
PGSC0003DMT400076798	Potato	nucleus	17.38	14.35
PGSC0003DMT400012623	Potato	nucleus, plastid	17.58	13.33
PGSC0003DMT400083772	Potato	plastid	16.41	13.06
PGSC0003DMT400041750	Potato	plastid	14.84	12.4
PGSC0003DMT400047665	Potato	nucleus	16.21	12.1
PGSC0003DMT400074198	Potato	plastid	8.4	9.68

Protein Annotations

EntrezGene:102589032	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
UniProt:M1BS08	PFAM:PF00013	EnsemblPlantsGene:PGSC0003DMG400020065	PGSC:PGSC0003DMG400020065	EnsemblPlants:PGSC0003DMT400051668	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF155	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000294B5CA	RefSeq:XP_006352750.1
SEG:seg	:	:	:	:	:

Description

Poly(RC)-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020065]

Coordinates

chr6:-:58837026..58845589

Molecular Weight (calculated)

55233.7 Da

IEP (calculated)

5.124

GRAVY (calculated)

-0.555

Length

512 amino acids

Sequence
(BLAST)

001: MAEESYQEHD LGNVYDADNV HSAADAHTME NMQEVDNAHT MENFQEMDNA HENLLPEEVK LETEEVQVAF LQEQPVKLEQ EEAQVESLQE HVIKSEPEEV
101: QIAENGSGGG EEKKWPGWPG ENVFRMLVPS QKVGGIIGRK GEYIKKTCEE TKARIKVLDG PHGTKERAVM ISAKEEPNLS IPPAMDGLLK VHKRIIDVDH
201: DSNAPGGAGK PASTRLLVAA TQAAILIGKQ GATVKSIQDE SRCTIRVLGG EHLPVFALPD DSIVEIQGEP AGVHKAVEMI AGHLRKFLVD RSVIGLFEKL
301: MQMPNAHAHQ NMPPPGPTQP WGPPPSSFPM SAGGPGYGAN HQYMPPPRQF DNYFPRVDMH QDKQPHQGPP VYGRDASVGA HGNAQPQQSI VSKVTQNIQI
401: PLSYADAVIG ASGSNISYIR RASGATIAVQ ETRGVPGEMT VEINGSASQV QTAQQLVQNS IADATSSMQN TAAGPPSQGY NPYPSQGHVY SSSTGHAPST
501: DYGSVYGGSY GY

Best Arabidopsis Sequence Match ( AT3G04610.1 )
(BLAST)

001: MAEAEDQQNF VAHNGDQVPD QGSDELHNGL PYQVHDETLV HQPYEVEDPI LEPQQYEVPD PTLEPQQYEV PDQTLEPQQY EVDDQLEYHQ YQLQDQANED
101: VQDHSQDDLQ YQPQNQEQFQ LQDEAHDQAQ YQAQGDVQDH NGDEVQDKVE DEEGIPEHLE SLQKSEPEED ATVGGEEKRW PGWPGETVFR MLVPAQKVGS
201: IIGRKGDVIK KIVEETRARI KILDGPPGTT ERAVMVSGKE EPESSLPPSM DGLLRVHMRI VDGLDGEASQ APPPSKVSTR LLVPASQAGS LIGKQGGTVK
301: AIQEASACIV RVLGSEDLPV FALQDDRVVE VVGEPTSVHR ALELIASHLR KFLVDRSIIP FFENQMQKPT RQMDHMPPPH QSWGPPQGHA PSVGGGGYGH
401: NPPPYMQPPP RHDSYYPPPE MRQPPMEKQP HQGISAYGRE PPMNVHVSSA PPMVAQQVTQ QMQIPLSYAD AVIGTSGSNI SYTRRLSGAT VTIQETRGVP
501: GEMTVEVSGT GSQVQTAVQL IQNFMAEAGA PAPAQPQTVA PEQQGYNPYA THGSVYAAAP TNPPGGYATD YSSGYGY

Arabidopsis Description

FLKFlowering locus K homology domain [Source:UniProtKB/Swiss-Prot;Acc:Q9SR13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.