Factsheet for PGSC0003DMT400047374

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g007810.2.1	Tomato	nucleus	95.12	95.3
VIT_01s0026g02650.t01	Wine grape	nucleus	68.86	64.16
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	58.72	59.06
PGSC0003DMT400003371	Potato	nucleus	59.29	58.41
PGSC0003DMT400064701	Potato	nucleus	58.54	56.22
Zm00001d029328_P002	Maize	nucleus	57.04	56.19
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	42.96	55.99
CDX81615	Canola	cytosol	48.03	55.77
AT2G03110.1	Thale cress	cytosol	15.95	55.56
TraesCS4A01G150800.1	Wheat	nucleus	55.91	55.29
KXG39277	Sorghum	nucleus	56.1	55.17
Bra026852.1-P	Field mustard	nucleus	49.53	54.43
CDY33769	Canola	nucleus	49.53	54.43
Os03t0376800-02	Rice	nucleus	55.35	54.43
AT1G14170.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	48.41	53.86
GSMUA_Achr6P10750_001	Banana	nucleus	52.91	53.01
CDY49107	Canola	nucleus	47.09	52.84
CDY39336	Canola	mitochondrion	46.72	52.64
HORVU4Hr1G049680.1	Barley	nucleus	56.47	51.72
TraesCS4D01G160700.2	Wheat	nucleus	54.6	51.69
TraesCS4B01G166500.2	Wheat	nucleus	54.6	51.69
CDY03018	Canola	nucleus	45.03	51.28
CDY45180	Canola	cytosol	39.59	49.88
Bra024789.1-P	Field mustard	cytosol	34.15	48.4
CDY51849	Canola	cytosol	7.88	39.62
PGSC0003DMT400087680	Potato	plastid	14.45	30.92
PGSC0003DMT400076798	Potato	nucleus	30.58	26.29
PGSC0003DMT400012623	Potato	nucleus, plastid	31.71	25.04
PGSC0003DMT400038635	Potato	cytosol	6.75	24.66
PGSC0003DMT400041750	Potato	plastid	25.89	22.51
PGSC0003DMT400083772	Potato	plastid	26.45	21.93
PGSC0003DMT400074198	Potato	plastid	17.64	21.17
PGSC0003DMT400051262	Potato	nucleus	19.7	20.92
PGSC0003DMT400076105	Potato	plastid	17.82	20.56
PGSC0003DMT400047665	Potato	nucleus	25.7	19.97
PGSC0003DMT400051668	Potato	cytosol	18.95	19.73
PGSC0003DMT400066836	Potato	nucleus, plastid	15.95	19.1
PGSC0003DMT400046406	Potato	cytosol	18.2	16.44

Protein Annotations

EntrezGene:102606449	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
UniProt:M1BKM6	PFAM:PF00013	EnsemblPlantsGene:PGSC0003DMG400018409	PGSC:PGSC0003DMG400018409	EnsemblPlants:PGSC0003DMT400047374	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF149	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0002957411	RefSeq:XP_015167673.1
SEG:seg	:	:	:	:	:

Description

KH domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018409]

Coordinates

chr5:+:4684512..4691819

Molecular Weight (calculated)

57175.0 Da

IEP (calculated)

6.265

GRAVY (calculated)

-0.478

Length

533 amino acids

Sequence
(BLAST)

001: MAGQRNNYGK RMQSESDYSR SDGSKRRTPT DEKESNSIGP EDTVFRYLCP TGKIGSIIGV GGDIAKQLRT ETNSKIRISE TIPGCEERVV TIYSGSEETN
101: VSEDTGDLIS PAQDALFRVH DRVLAEDLRM DEDLEDHQQI TVRMLVPSDQ IGCVIGKGGL VIQNLRSETG AQIRVLSSEH LPPCALNSDE LLQITGEGAV
201: VKKALYQVAA RLHDNPSRSQ HQLLSSPSIF RSGAGLVNPH AGTQVMGVTS LMGPYASYKS DGRSRSSSVK EFAVRLVCPT ENVGAVIGKG GGIIKQLRQE
301: SGASIKVDSA AAEGDDCIIF VSAKEAFEDQ SPTIDATMRL QPRSSEKTEK ESGDAILTTR LLVPSSRVGC LIGKGGSIIN EMRNSTRASI RVLSKENLPK
401: VASEDDEMVQ ITGDANVAAN ALLQVLMRLR ANTFEMEGSF PAFSPGLSYV PMSASMPDGS RYGNRDNRSR RHGYSSYSGG HDYNDLSPSD NYGGSQVGGG
501: GNYAPYGVYS SGRPSSAGVS SHNPSAYGKS YGY

Best Arabidopsis Sequence Match ( AT1G14170.3 )
(BLAST)

001: MASTLRNIHG KRSNLQSEFT GNGGSKRRNL HDETDQNVIA SEDTVYRYLC PVKKTGSIIG KGGEIAKQIR SETKSNMRIN EALPGCEERV VTMYSTNEEL
101: NHFGDDGELV CPALDALFKV HDMVVADADQ DDGTDDDNDL GEKQTVTVRM LVPSDQIGCV IGKGGQVIQN LRNDTNAQIR VIKDHLPACA LTLSHDELLL
201: IIGEPLVVRE ALYQVASLLH DNPSRFQHLL LSSSSSSMHQ PGAMLMSAAL TSSHRNYAVR RDIADAREFC VCFICPAENV GGVIGKGGGF INQIRQETGA
301: TIRVNTSETD DDDCIIFISS KEFYEDQSPA VNAAIRLQQR CSEKVGKDAN DLAISTRLLV SSSQIGCLIG KGGAVISEMR SVTRANIRIL QKEDVPKIAR
401: EDEEMVQITG SPDAAMKALT QVILRLRANS FDMDHGLVLL PTSFPYIPQV TESSSKSKYA KRDDHSKLNS NSKRRNHVS

Arabidopsis Description

F7A19.25 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI71]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.