Factsheet for Bra024789.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45180	Canola	cytosol	98.4	87.47
Bra026852.1-P	Field mustard	nucleus	70.21	54.43
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	55.59	51.1
AT2G03110.1	Thale cress	cytosol	20.48	50.33
VIT_01s0026g02650.t01	Wine grape	nucleus	54.52	35.84
PGSC0003DMT400047374	Potato	nucleus	48.4	34.15
Solyc05g007810.2.1	Tomato	nucleus	47.87	33.83
Os03t0376800-02	Rice	nucleus	48.4	33.58
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	46.81	33.21
Zm00001d029328_P002	Maize	nucleus	47.07	32.72
KXG39277	Sorghum	nucleus	47.07	32.66
GSMUA_Achr6P10750_001	Banana	nucleus	45.74	32.33
TraesCS4A01G150800.1	Wheat	nucleus	46.01	32.1
Bra008709.1-P	Field mustard	nucleus	43.35	31.53
TraesCS4B01G166500.2	Wheat	nucleus	45.48	30.37
TraesCS4D01G160700.2	Wheat	nucleus	45.21	30.2
HORVU4Hr1G049680.1	Barley	nucleus	46.01	29.73
Bra006294.1-P	Field mustard	nucleus	44.41	27.83
Bra013302.1-P	Field mustard	nucleus	25.8	16.55
Bra025032.1-P	Field mustard	nucleus	26.6	15.48
Bra022624.1-P	Field mustard	nucleus	26.33	14.98
Bra003085.1-P	Field mustard	nucleus	25.0	14.71
Bra001111.1-P	Field mustard	cytosol	15.16	14.62
Bra019133.1-P	Field mustard	cytosol	14.36	13.57
Bra014290.1-P	Field mustard	plastid	20.21	13.08
Bra038508.1-P	Field mustard	cytosol, plastid	21.81	12.83
Bra030226.1-P	Field mustard	plastid	21.01	12.74
Bra024292.1-P	Field mustard	nucleus	26.33	11.55
Bra013940.1-P	Field mustard	cytosol	11.97	10.59

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EnsemblPlantsGene:Bra024789	EnsemblPlants:Bra024789.1	EnsemblPlants:Bra024789.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	UniProt:M4E7N3	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288
PANTHER:PTHR10288:SF149	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI000253F865	SEG:seg	:

Description

AT1G14170 (E=2e-131) | KH domain-containing protein

Coordinates

chrA06:-:23447273..23448731

Molecular Weight (calculated)

41603.2 Da

IEP (calculated)

5.161

GRAVY (calculated)

-0.350

Length

376 amino acids

Sequence
(BLAST)

001: MVVAGEVDSY GYYDEYSEKQ RQTVAARMLV ASDQIGCLIG KGGQVIQKLR EETNAQIRVI NDSLPLCALA LSQDELLQII GEPLAVREAL YQVASLLYDN
101: PSRFQHYFLS SSSSSLHQQQ SGGMLMSPPL TSSHKNYSAS RDVAEAREFS ICFICPAENV GGVIGKGGSF INQIRQESGA VVKVNTSETD EDDECIIFIS
201: SNEFFEDQSP TVDAALRLQT RCSEKVGKDS TDSAISTRVL VPSSRVGCLI GKGGAIISEM RSVTKANIRI VQGEDVPQIA REDEEMVQIT GSRDAAIKAL
301: TQVMLRLRAN VFDMDRGLVL LPTFFPYISQ ATETSSKPKQ QRKRENYSHG SMEIGRNEDY GNQMNSNSYR RNHVYY

Best Arabidopsis Sequence Match ( AT1G14170.3 )
(BLAST)

001: MASTLRNIHG KRSNLQSEFT GNGGSKRRNL HDETDQNVIA SEDTVYRYLC PVKKTGSIIG KGGEIAKQIR SETKSNMRIN EALPGCEERV VTMYSTNEEL
101: NHFGDDGELV CPALDALFKV HDMVVADADQ DDGTDDDNDL GEKQTVTVRM LVPSDQIGCV IGKGGQVIQN LRNDTNAQIR VIKDHLPACA LTLSHDELLL
201: IIGEPLVVRE ALYQVASLLH DNPSRFQHLL LSSSSSSMHQ PGAMLMSAAL TSSHRNYAVR RDIADAREFC VCFICPAENV GGVIGKGGGF INQIRQETGA
301: TIRVNTSETD DDDCIIFISS KEFYEDQSPA VNAAIRLQQR CSEKVGKDAN DLAISTRLLV SSSQIGCLIG KGGAVISEMR SVTRANIRIL QKEDVPKIAR
401: EDEEMVQITG SPDAAMKALT QVILRLRANS FDMDHGLVLL PTSFPYIPQV TESSSKSKYA KRDDHSKLNS NSKRRNHVS

Arabidopsis Description

F7A19.25 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI71]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.