CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024789.1-P	Field mustard	cytosol	87.47	98.4
CDY03018	Canola	nucleus	93.62	84.62
AT2G03110.1	Thale cress	cytosol	26.71	73.86
CDY51849	Canola	cytosol	17.26	68.87
CDX81615	Canola	cytosol	69.74	64.27
CDY33769	Canola	nucleus	70.69	61.65
CDY39336	Canola	mitochondrion	67.85	60.68
CDY49107	Canola	nucleus	67.38	60.0
VIT_01s0026g02650.t01	Wine grape	nucleus	55.08	40.73
PGSC0003DMT400047374	Potato	nucleus	49.88	39.59
Solyc05g007810.2.1	Tomato	nucleus	48.94	38.91
Os03t0376800-02	Rice	nucleus	49.17	38.38
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	47.52	37.92
GSMUA_Achr6P10750_001	Banana	nucleus	47.28	37.59
CDY60930	Canola	nucleus	47.28	37.59
Zm00001d029328_P002	Maize	nucleus	47.75	37.34
KXG39277	Sorghum	nucleus	47.52	37.08
CDX69536	Canola	nucleus	46.1	36.65
TraesCS4A01G150800.1	Wheat	nucleus	46.34	36.36
TraesCS4B01G166500.2	Wheat	nucleus	45.86	34.46
TraesCS4D01G160700.2	Wheat	nucleus	45.63	34.28
HORVU4Hr1G049680.1	Barley	nucleus	46.81	34.02
CDX70604	Canola	nucleus	45.86	33.45
CDX78623	Canola	nucleus	46.1	32.5
CDX99471	Canola	nucleus	11.58	22.79
CDX78846	Canola	nucleus	26.95	19.86
CDX77643	Canola	nucleus	28.37	18.78
CDY33460	Canola	nucleus	28.37	18.72
CDX99470	Canola	nucleus	11.82	18.45
CDX96185	Canola	nucleus	25.53	16.85
CDY27030	Canola	nucleus	26.48	16.84
CDY56908	Canola	nucleus	25.06	16.67
CDY49453	Canola	nucleus	25.3	16.67
CDY46555	Canola	plastid	21.04	15.32
CDX84522	Canola	nucleus	26.48	15.11
CDY52947	Canola	plastid	20.57	15.1
CDY13742	Canola	mitochondrion	21.75	14.7
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	21.75	14.58
CDY25609	Canola	cytosol	21.04	14.33
CDX89490	Canola	cytosol	20.33	13.89
CDX92741	Canola	cytosol	15.37	13.18
CDX89376	Canola	cytosol	13.24	13.18
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	14.89	13.12
CDY42768	Canola	cytosol	15.13	12.98
CDY64706	Canola	nucleus	12.29	12.87
CDY40663	Canola	cytosol	16.78	12.61
CDX74180	Canola	cytosol	16.78	12.61
CDY65294	Canola	cytosol	13.0	12.53

Protein Annotations

Gene3D:3.30.310.210	MapMan:35.1	GO:A0A078I2T7	UniProt:A0A078I2T7	EnsemblPlants:CDY45180	ProteinID:CDY45180
ProteinID:CDY45180.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00081603001
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF149	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0004EEA189	SEG:seg

Description

BnaA06g33840DBnaA06g33840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2T7]

Coordinates

chrLK032617:-:80369..82579

Molecular Weight (calculated)

46810.3 Da

IEP (calculated)

4.807

GRAVY (calculated)

-0.326

Length

423 amino acids

Sequence
(BLAST)

001: MRINEALLGC EERVVTIYST SEETNCIGDD EEFACPAFDA LLKVHDMVVA EGVDSYGYND EYSEKQRQTV AARMLVASDQ IGCLIGKGGQ VIQKLREEIN
101: AQIRVINDNL PLCALALSQD ELLQIIGEPL AVRKALYQVA SLLYDNPSRF QHYFLSSSSS SSLHQQQSGG MLMSPPLTSS HKNYSASRDV AEAREFSICF
201: ICPAENVGGV IGKGGSFINQ IRQESGAVVK VNTSETDEDD ECIIFISSNE FFEDQSPTVD AALRLQTRCS EKVGKDSTDS AISTRVLVPS SRVGCLIGKG
301: GAIISEMRSV TKANIRIVQG EDVPQIARED EEMVQITGSR DAAIKALTQV MLRLRANVFD MDRGLVLLPT FFPYISQATE TSSKPKQQRK RENYSHGSME
401: IGRNEDYGNQ MNSNSYRRNH VYY

Best Arabidopsis Sequence Match ( AT1G14170.1 )
(BLAST)

001: MASTLRNIHD QNVIASEDTV YRYLCPVKKT GSIIGKGGEI AKQIRSETKS NMRINEALPG CEERVVTMYS TNEELNHFGD DGELVCPALD ALFKVHDMVV
101: ADADQDDGTD DDNDLGEKQT VTVRMLVPSD QIGCVIGKGG QVIQNLRNDT NAQIRVIKDH LPACALTLSH DELLLIIGEP LVVREALYQV ASLLHDNPSR
201: FQHLLLSSSS SSMHQPGAML MSAALTSSHR NYAVRRDIAD AREFCVCFIC PAENVGGVIG KGGGFINQIR QETGATIRVN TSETDDDDCI IFISSKEFYE
301: DQSPAVNAAI RLQQRCSEKV GKDANDLAIS TRLLVSSSQI GCLIGKGGAV ISEMRSVTRA NIRILQKEDV PKIAREDEEM VQITGSPDAA MKALTQVILR
401: LRANSFDMDH GLVLLPTSFP YIPQVTESSS KSKYAKRDDH SKLNSNSKRR NHVS

Arabidopsis Description

F7A19.25 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.