Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G160700.2 | Wheat | nucleus | 93.69 | 89.7 |
| TraesCS4B01G166500.2 | Wheat | nucleus | 92.95 | 88.99 |
| HORVU4Hr1G049680.1 | Barley | nucleus | 95.92 | 88.83 |
| Os03t0376800-02 | Rice | nucleus | 84.79 | 84.32 |
| KXG39277 | Sorghum | nucleus | 79.96 | 79.52 |
| Zm00001d029328_P002 | Maize | nucleus | 79.04 | 78.74 |
| GSMUA_Achr7P11520_001 | Banana | mitochondrion, nucleus | 67.72 | 68.87 |
| GSMUA_Achr6P10750_001 | Banana | nucleus | 61.6 | 62.41 |
| VIT_01s0026g02650.t01 | Wine grape | nucleus | 62.71 | 59.09 |
| PGSC0003DMT400047374 | Potato | nucleus | 55.29 | 55.91 |
| Solyc05g007810.2.1 | Tomato | nucleus | 54.73 | 55.45 |
| AT2G03110.1 | Thale cress | cytosol | 15.4 | 54.25 |
| Bra019674.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 39.15 | 51.59 |
| AT1G14170.3 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 44.9 | 50.52 |
| CDY33769 | Canola | nucleus | 44.9 | 49.9 |
| Bra026852.1-P | Field mustard | nucleus | 44.9 | 49.9 |
| CDX81615 | Canola | cytosol | 42.3 | 49.67 |
| CDY49107 | Canola | nucleus | 43.41 | 49.26 |
| CDY03018 | Canola | nucleus | 42.67 | 49.15 |
| CDY39336 | Canola | mitochondrion | 43.04 | 49.05 |
| CDY45180 | Canola | cytosol | 36.36 | 46.34 |
| Bra024789.1-P | Field mustard | cytosol | 32.1 | 46.01 |
| CDY51849 | Canola | cytosol | 7.79 | 39.62 |
| TraesCS3A01G512500.1 | Wheat | nucleus | 28.57 | 24.41 |
| TraesCS4A01G333900.1 | Wheat | nucleus | 27.83 | 23.73 |
| TraesCS1A01G164200.3 | Wheat | nucleus | 34.88 | 22.35 |
| TraesCS1A01G216900.1 | Wheat | cytosol | 18.37 | 22.0 |
| TraesCS3A01G158700.1 | Wheat | nucleus | 27.46 | 20.99 |
| TraesCS5A01G276800.5 | Wheat | plastid | 24.3 | 20.89 |
| TraesCS4A01G245800.1 | Wheat | nucleus | 18.74 | 19.24 |
| TraesCS5A01G059500.1 | Wheat | cytosol | 18.18 | 18.85 |
| TraesCS7A01G333800.1 | Wheat | nucleus | 22.26 | 17.96 |
| TraesCS6A01G084000.1 | Wheat | cytosol | 14.66 | 16.49 |
| TraesCS1A01G136600.1 | Wheat | cytosol, mitochondrion, nucleus | 18.18 | 16.36 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G150800.1 | EnsemblPlantsGene:TraesCS4A01G150800 | Gene3D:3.30.1370.10 | Gene3D:3.30.310.210 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf |
| PANTHER:PTHR10288 | PANTHER:PTHR10288:SF151 | PFAM:PF00013 | PFscan:PS50084 | SEG:seg | SMART:SM00322 |
| SUPFAM:SSF54791 | TIGR:cd02396 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4A:-:298241231..298244586
Molecular Weight (calculated)
57928.1 Da
IEP (calculated)
6.893
GRAVY (calculated)
-0.413
Length
539 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGPGHRNSH GKRQSDYAEN GGGKRRNPGD DTYAPGPDDT VYRYLCTSRK IGSIIGRGGE IAKQLRSDTQ AKIRIGESVP NCDDRVITIF SSSRETNTIE
101: DTEDKVCAAQ DALFRVHEKL ATDDGPVNEE NEEGLGQLTV RLLVPSDQIG CIIGKGGHII QGIRSDTGSQ IRVLSNEHLP ACATSGDELL LIIGDPMVVR
201: KALLQVSSRL HGNPSRSQHL LASSLTQPFP AGSRLGSSST APVVGITPMV SPYGRYKGDM VGDWPSIYQQ RREVSSAKEF SLRLLCAAAN VGGVIGKRGG
301: IIKQIRQESG AFIKVDSSSA EDDCIITVSA KEFFEDPVSP TIDATVRLQP RCSEKIDAES GEPSYTTRLL VSTSRIGCLI GKGGSIITEI RRTSRATIRI
401: ISKEDVPKVA SDDEEMVQIS GDLDVARHAL VQITTRLKAN FFEREGALSG FPPVIPYHPL PASVSDEPKY LSRDNKSAGH DYPYSSGYHA SDDVLPVDRY
501: ANYGSSQVYG GGYGAYSGGS GSSGLSGSTY LSSGKRYGY
101: DTEDKVCAAQ DALFRVHEKL ATDDGPVNEE NEEGLGQLTV RLLVPSDQIG CIIGKGGHII QGIRSDTGSQ IRVLSNEHLP ACATSGDELL LIIGDPMVVR
201: KALLQVSSRL HGNPSRSQHL LASSLTQPFP AGSRLGSSST APVVGITPMV SPYGRYKGDM VGDWPSIYQQ RREVSSAKEF SLRLLCAAAN VGGVIGKRGG
301: IIKQIRQESG AFIKVDSSSA EDDCIITVSA KEFFEDPVSP TIDATVRLQP RCSEKIDAES GEPSYTTRLL VSTSRIGCLI GKGGSIITEI RRTSRATIRI
401: ISKEDVPKVA SDDEEMVQIS GDLDVARHAL VQITTRLKAN FFEREGALSG FPPVIPYHPL PASVSDEPKY LSRDNKSAGH DYPYSSGYHA SDDVLPVDRY
501: ANYGSSQVYG GGYGAYSGGS GSSGLSGSTY LSSGKRYGY
001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG
Arabidopsis Description
RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.