Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G161200.3 | Wheat | nucleus | 95.72 | 96.75 |
| TraesCS1B01G181000.3 | Wheat | nucleus | 95.6 | 95.6 |
| HORVU1Hr1G043680.7 | Barley | nucleus | 88.58 | 91.41 |
| Os10t0495000-01 | Rice | nucleus | 68.61 | 75.72 |
| KXG38256 | Sorghum | nucleus | 67.42 | 70.88 |
| Zm00001d013963_P002 | Maize | nucleus | 65.87 | 67.89 |
| Zm00001d032597_P006 | Maize | golgi, plasma membrane | 66.83 | 57.0 |
| GSMUA_Achr3P21030_001 | Banana | nucleus | 39.12 | 49.4 |
| VIT_14s0006g02960.t01 | Wine grape | nucleus, plastid | 31.15 | 38.76 |
| TraesCS4A01G150800.1 | Wheat | nucleus | 22.35 | 34.88 |
| Solyc03g034200.2.1 | Tomato | nucleus | 27.59 | 32.81 |
| TraesCS3A01G512500.1 | Wheat | nucleus | 20.57 | 27.42 |
| TraesCS4A01G333900.1 | Wheat | nucleus | 20.1 | 26.74 |
| TraesCS5A01G276800.5 | Wheat | plastid | 19.5 | 26.16 |
| TraesCS7A01G333800.1 | Wheat | nucleus | 18.55 | 23.35 |
| TraesCS3A01G158700.1 | Wheat | nucleus | 19.02 | 22.7 |
| TraesCS1A01G216900.1 | Wheat | cytosol | 11.65 | 21.78 |
| TraesCS4A01G245800.1 | Wheat | nucleus | 11.3 | 18.1 |
| TraesCS6A01G084000.1 | Wheat | cytosol | 10.11 | 17.75 |
| TraesCS5A01G059500.1 | Wheat | cytosol | 10.7 | 17.31 |
| TraesCS1A01G136600.1 | Wheat | cytosol, mitochondrion, nucleus | 11.18 | 15.69 |
Protein Annotations
| Gene3D:3.30.1370.10 | Gene3D:3.30.310.210 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR011049 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf |
| PFAM:PF00013 | PFscan:PS50084 | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF130 | SMART:SM00322 | SUPFAM:SSF51120 |
| SUPFAM:SSF54791 | InterPro:Serralysin-like_metalloprot_C | EnsemblPlantsGene:TraesCS1A01G164200 | EnsemblPlants:TraesCS1A01G164200.3 | TIGR:cd00105 | TIGR:cd02396 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:295585163..295589034
Molecular Weight (calculated)
92243.3 Da
IEP (calculated)
7.869
GRAVY (calculated)
-0.696
Length
841 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLSLCRLMD YDNSRRHNQS TSKKRTRFNS DDGKRKRLNY RQDGGHMSSQ PIETVYRILC PGKKIGGVLG RGGHVVKALR DETKAKIRVA DSIPGADERV
101: IIIFDYQNNS EQASQNISNI DGPENMKPHC FAQDALLKIH DKIAADEDSN DGVTCENSET AGDVTSRILV PGNQVGCLLG KGGSIIQQLR NDTGAGIRVL
201: PSENLPQCAL KSDELVQISG APSLVRKALY EISTRLHRHP RKENPSLEEI IDASTQRKRE SPPPLPHENH MLPHLHVDHP PPMPLLDPYR NGPLQYPVPE
301: PEEFSIKILC ASELIGPVIG RSGANVRQLE QQTGARIMVQ ELHKDASGER LIVISSKEIP ADPVSPTIEA LILLHSKVSE SKVSEPSVSA PSESAPSEEH
401: KLVTRLVVPS KKVGCIIGEG GKVITEMRRR IGAEIRVYSK ADKPKYLSFH DELVQVSGSP DIAREALTEI ASRLRNRILR DGISSFDGPP ADIFPSRDFT
501: LYGRPANPPY GRLANDTPYG RPANDTPYGR PANDSPYQRR LAIDQPYGLA SDSLYGRPAN DPLYGRPAND PPYGRPANDP PYGRPANDAS YGRPANDASY
601: GRPANDAPYG RPANDTPYGR PNNKPHDSVD YFSKRREYPS GSPFASDAPP SASYDRYAAS ARLPTREMPL PVSPGADYMS HRSYHDHMPT DSYSSRGMQQ
701: LGLSRAGNSN MQQLGVTRAG NSNAYDYTEA AGQMHGREDY QRVADVTGYS SSSVELRIPN SSLESIVGAG GVNLAEIRQI SGARMKLLEA RPGSSESIME
801: IQGMPDQVRV AQSLLQGFIG ANSQSVQPSQ SSRDVHYPRW N
101: IIIFDYQNNS EQASQNISNI DGPENMKPHC FAQDALLKIH DKIAADEDSN DGVTCENSET AGDVTSRILV PGNQVGCLLG KGGSIIQQLR NDTGAGIRVL
201: PSENLPQCAL KSDELVQISG APSLVRKALY EISTRLHRHP RKENPSLEEI IDASTQRKRE SPPPLPHENH MLPHLHVDHP PPMPLLDPYR NGPLQYPVPE
301: PEEFSIKILC ASELIGPVIG RSGANVRQLE QQTGARIMVQ ELHKDASGER LIVISSKEIP ADPVSPTIEA LILLHSKVSE SKVSEPSVSA PSESAPSEEH
401: KLVTRLVVPS KKVGCIIGEG GKVITEMRRR IGAEIRVYSK ADKPKYLSFH DELVQVSGSP DIAREALTEI ASRLRNRILR DGISSFDGPP ADIFPSRDFT
501: LYGRPANPPY GRLANDTPYG RPANDTPYGR PANDSPYQRR LAIDQPYGLA SDSLYGRPAN DPLYGRPAND PPYGRPANDP PYGRPANDAS YGRPANDASY
601: GRPANDAPYG RPANDTPYGR PNNKPHDSVD YFSKRREYPS GSPFASDAPP SASYDRYAAS ARLPTREMPL PVSPGADYMS HRSYHDHMPT DSYSSRGMQQ
701: LGLSRAGNSN MQQLGVTRAG NSNAYDYTEA AGQMHGREDY QRVADVTGYS SSSVELRIPN SSLESIVGAG GVNLAEIRQI SGARMKLLEA RPGSSESIME
801: IQGMPDQVRV AQSLLQGFIG ANSQSVQPSQ SSRDVHYPRW N
001: MASTLRNIHD QNVIASEDTV YRYLCPVKKT GSIIGKGGEI AKQIRSETKS NMRINEALPG CEERVVTMYS TNEELNHFGD DGELVCPALD ALFKVHDMVV
101: ADADQDDGTD DDNDLGEKQT VTVRMLVPSD QIGCVIGKGG QVIQNLRNDT NAQIRVIKDH LPACALTLSH DELLLIIGEP LVVREALYQV ASLLHDNPSR
201: FQHLLLSSSS SSMHQPGAML MSAALTSSHR NYAVRRDIAD AREFCVCFIC PAENVGGVIG KGGGFINQIR QETGATIRVN TSETDDDDCI IFISSKEFYE
301: DQSPAVNAAI RLQQRCSEKV GKDANDLAIS TRLLVSSSQI GCLIGKGGAV ISEMRSVTRA NIRILQKEDV PKIAREDEEM VQITGSPDAA MKALTQVILR
401: LRANSFDMDH GLVLLPTSFP YIPQVTESSS KSKYAKRDDH SKLNSNSKRR NHVS
101: ADADQDDGTD DDNDLGEKQT VTVRMLVPSD QIGCVIGKGG QVIQNLRNDT NAQIRVIKDH LPACALTLSH DELLLIIGEP LVVREALYQV ASLLHDNPSR
201: FQHLLLSSSS SSMHQPGAML MSAALTSSHR NYAVRRDIAD AREFCVCFIC PAENVGGVIG KGGGFINQIR QETGATIRVN TSETDDDDCI IFISSKEFYE
301: DQSPAVNAAI RLQQRCSEKV GKDANDLAIS TRLLVSSSQI GCLIGKGGAV ISEMRSVTRA NIRILQKEDV PKIAREDEEM VQITGSPDAA MKALTQVILR
401: LRANSFDMDH GLVLLPTSFP YIPQVTESSS KSKYAKRDDH SKLNSNSKRR NHVS
Arabidopsis Description
F7A19.25 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI71]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.