Factsheet for VIT_14s0006g02960.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g034200.2.1	Tomato	nucleus	59.32	56.72
GSMUA_Achr3P21030_001	Banana	nucleus	44.97	45.65
VIT_14s0108g01040.t01	Wine grape	nucleus	31.07	38.32
VIT_09s0002g00070.t01	Wine grape	mitochondrion	6.95	36.72
Os10t0495000-01	Rice	nucleus	40.09	35.56
VIT_01s0026g02650.t01	Wine grape	nucleus	30.03	35.49
KXG38256	Sorghum	nucleus	39.65	33.5
Zm00001d013963_P002	Maize	nucleus	39.65	32.84
HORVU1Hr1G043680.7	Barley	nucleus	38.76	32.15
TraesCS1D01G161200.3	Wheat	nucleus	38.76	31.49
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	10.95	31.36
TraesCS1B01G181000.3	Wheat	nucleus	38.91	31.27
TraesCS1A01G164200.3	Wheat	nucleus	38.76	31.15
VIT_03s0038g00420.t01	Wine grape	plastid	27.96	29.17
VIT_14s0006g00030.t01	Wine grape	cytosol	12.13	28.98
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	26.18	28.41
VIT_18s0001g08280.t01	Wine grape	cytosol	28.85	27.82
VIT_09s0054g00450.t01	Wine grape	plastid	28.85	27.7
VIT_15s0021g01940.t01	Wine grape	nucleus	14.05	27.46
Zm00001d032597_P006	Maize	golgi, plasma membrane	39.35	26.98
VIT_16s0098g01660.t01	Wine grape	nucleus	25.0	25.57
VIT_07s0141g00800.t01	Wine grape	cytosol	15.09	23.56
VIT_11s0052g00030.t01	Wine grape	plastid	14.35	20.82
VIT_14s0081g00440.t01	Wine grape	cytosol	15.68	20.74

Protein Annotations

EntrezGene:100253195	wikigene:100253195	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EMBL:AM472450
ProteinID:CAN72739	ProteinID:CAN72739.1	ProteinID:CBI33655	ProteinID:CBI33655.3	UniProt:D7TT33	EMBL:FN596245
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EntrezGene:LOC100253195	wikigene:LOC100253195	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF130	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0001BE3C35	ArrayExpress:VIT_14s0006g02960
EnsemblPlantsGene:VIT_14s0006g02960	EnsemblPlants:VIT_14s0006g02960.t01	unigene:Vvi.13805	RefSeq:XP_003633728	RefSeq:XP_003633728.1	RefSeq:XP_010660429.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:21229337..21236559

Molecular Weight (calculated)

72115.1 Da

IEP (calculated)

7.082

GRAVY (calculated)

-0.552

Length

676 amino acids

Sequence
(BLAST)

001: MEGTRRGSFK KRPNFQFKRK GSNKRGRWNN SSHEQSFGNS QVADTVYRIL CPSKKIGGVI GKGGGIVKAL REETQAKITV ADSVPGSDER VIIIYSAPTK
101: NPKEHDSNED PEMEEEQDHM EPHCPAQDAL MKVHERIIEE DLFGGTEFED DNENTVVTAR LLVPNNMVGC LLGKRGDVIQ RLRSETGANI RVLPAEHLPT
201: CAMSSDELVQ ISGKPAVAKK ALYEVSTLLH QNPRKDKPPS SFPMSFGGQG FHPPGASMGN MPPPGNPMWS NRNSNSQGVP PMPWMGGYRS QPSVVPGGFD
301: GVHAGHGGEA SGEFSMKILC PAGKIGGVIG KGGFNVKQLQ QETGASIHVE DALAESEERV IRVSSFEALW NPRSQTIEAI LQLQNKTSEY SDKGGMTTRL
401: LVPSSKVGCI LGQGGHVINE MRRRTQADIR VYSKEDKPKC ASDDEELVQI SGNFGVAKDA LAEIASRLRV RCLRDANGGV EPAPVGPVPG FGHPGKLPGG
501: LPSSSGALGA GSSGGFELSK GGGLEYEPQS YPVPPAATGY HNVNSSMESK IPNNSVSSVI GMGGGNVANM SEMAGARVKL QDPQSGGSEC VVEIRGSSEH
601: LTAAQSILQA FMASAGAGGQ NMNPQQGSYQ NMSAHPQAPY QNMNAPPQVP YQSMNAPPQQ AAAYPNMSAQ QSSYQY

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.