Factsheet for VIT_09s0002g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 5
extracellular 2
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	82.03	44.49
VIT_14s0006g00030.t01	Wine grape	cytosol	64.06	28.98
VIT_14s0108g01040.t01	Wine grape	nucleus	86.72	20.26
Solyc02g088120.2.1	Tomato	nucleus	66.41	16.19
PGSC0003DMT400003371	Potato	nucleus	67.97	16.08
KRG93559	Soybean	nucleus	68.75	16.06
KRH18467	Soybean	nucleus	67.19	15.69
PGSC0003DMT400064701	Potato	nucleus	66.41	15.32
KRH40065	Soybean	nucleus	64.06	15.19
KRH01196	Soybean	nucleus	64.06	15.1
VIT_01s0026g02650.t01	Wine grape	nucleus	64.84	14.51
AT5G15270.2	Thale cress	nucleus	58.59	13.69
Solyc02g067210.2.1	Tomato	nucleus	65.62	13.64
CDX70604	Canola	nucleus	60.94	13.45
CDX78623	Canola	nucleus	58.59	12.5
Bra008709.1-P	Field mustard	nucleus	50.0	12.38
Bra006294.1-P	Field mustard	nucleus	57.81	12.33
CDY60930	Canola	nucleus	50.78	12.22
CDX69536	Canola	nucleus	49.22	11.84
KRH58152	Soybean	cytosol	10.16	10.24
VIT_15s0021g01940.t01	Wine grape	nucleus	27.34	10.12
VIT_07s0141g00800.t01	Wine grape	cytosol	25.0	7.39
VIT_14s0006g02960.t01	Wine grape	nucleus, plastid	36.72	6.95
VIT_09s0054g00450.t01	Wine grape	plastid	35.94	6.53
VIT_14s0081g00440.t01	Wine grape	cytosol	25.78	6.46
VIT_03s0038g00420.t01	Wine grape	plastid	30.47	6.02
VIT_18s0001g08280.t01	Wine grape	cytosol	32.03	5.85
VIT_16s0098g01660.t01	Wine grape	nucleus	29.69	5.75
VIT_11s0052g00030.t01	Wine grape	plastid	20.31	5.58
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	24.22	4.98

Protein Annotations

Gene3D:3.30.1370.10	MapMan:35.2	ProteinID:CCB59232	ProteinID:CCB59232.1	UniProt:F6HXK2	EMBL:FN596494
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF151
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0002109C96	ArrayExpress:VIT_09s0002g00070	EnsemblPlantsGene:VIT_09s0002g00070	EnsemblPlants:VIT_09s0002g00070.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:52717..53737

Molecular Weight (calculated)

13647.6 Da

IEP (calculated)

9.149

GRAVY (calculated)

0.128

Length

128 amino acids

Sequence
(BLAST)

001: MAVTVRLLVS FNQIGCVIGK GGQIIQSIRS ESGAQIRILK DDHLPSCSLS SNELIQISKE PSIVRKILYQ IASRLHDNPS RSQHLFVYVV PIGYSSSGSL
101: MGLTSGAPIM GLAPLVGTYG GYRGDSGD

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.