Factsheet for VIT_18s0001g08280.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52837	Soybean	plastid	63.34	65.68
Solyc04g077060.2.1	Tomato	nucleus	44.08	65.33
KRH62129	Soybean	plastid	62.2	64.31
PGSC0003DMT400012623	Potato	nucleus, plastid	61.63	64.0
GSMUA_Achr6P13890_001	Banana	cytosol	56.78	60.76
GSMUA_Achr10P...	Banana	cytosol	54.35	57.55
Os01t0235800-01	Rice	cytosol	35.81	53.63
TraesCS3D01G166400.1	Wheat	cytosol, mitochondrion, nucleus	44.79	44.54
TraesCS3A01G158700.1	Wheat	nucleus	44.79	44.54
TraesCS3B01G189700.1	Wheat	nucleus	44.94	44.49
Zm00001d009014_P004	Maize	nucleus	43.22	42.98
EES02175	Sorghum	nucleus, plastid	43.51	42.6
HORVU3Hr1G057270.16	Barley	plastid	43.79	39.56
VIT_09s0054g00450.t01	Wine grape	plastid	37.09	36.93
VIT_03s0038g00420.t01	Wine grape	plastid	33.52	36.27
VIT_14s0108g01040.t01	Wine grape	nucleus	26.11	33.39
VIT_09s0002g00070.t01	Wine grape	mitochondrion	5.85	32.03
VIT_01s0026g02650.t01	Wine grape	nucleus	25.82	31.64
VIT_14s0006g02960.t01	Wine grape	nucleus, plastid	27.82	28.85
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	9.7	28.81
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	25.39	28.57
VIT_16s0098g01660.t01	Wine grape	nucleus	26.68	28.29
VIT_14s0006g00030.t01	Wine grape	cytosol	11.41	28.27
VIT_15s0021g01940.t01	Wine grape	nucleus	13.41	27.17
VIT_11s0052g00030.t01	Wine grape	plastid	13.84	20.82
VIT_07s0141g00800.t01	Wine grape	cytosol	12.13	19.63
VIT_14s0081g00440.t01	Wine grape	cytosol	13.55	18.59

Protein Annotations

EntrezGene:100267715	wikigene:100267715	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EMBL:AM440723
ProteinID:CAN78473	ProteinID:CAN78473.1	ProteinID:CCB45703	ProteinID:CCB45703.1	UniProt:F6H152	EMBL:FN595227
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EntrezGene:LOC100267715	wikigene:LOC100267715	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF148	SMART:SM00322	SUPFAM:SSF54791	TIGR:TC64124	UniParc:UPI0001985438
ArrayExpress:VIT_18s0001g08280	EnsemblPlantsGene:VIT_18s0001g08280	EnsemblPlants:VIT_18s0001g08280.t01	unigene:Vvi.473	RefSeq:XP_002283591	RefSeq:XP_002283591.1
RefSeq:XP_010664459.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:-:6777866..6788159

Molecular Weight (calculated)

75658.5 Da

IEP (calculated)

5.986

GRAVY (calculated)

-0.407

Length

701 amino acids

Sequence
(BLAST)

001: MSFSLTPSKR SYERSLTDSN GKGKWQKSGG FYSQNQSLKI SPGTVVFRVL CPASKTGSVI GKGGTIISQI RQETGVKVRV EETVSGCDER VVLITGSDKD
101: TEADNEQSKE DGEDTKAAEE VSDTKEPGEN DEDKESVPVE DSQVEKGISS VQKALLLVFE RMAEGESETN GGDEDSNKSP TFVVRLLVLS SQVGCLLGKG
201: GSVIKQMSAE SGAQIRILPR DKLPLCASPS DELVQITGEL DACKQALQSI SQQLLENPPR DYDIVSTNPT GSSSHLFGPP LPRSEAQPPP NYSFPAQGAP
301: YAAGVRDTDY HSNTPQLHKF HESGMPGWMK PQDILTFRLL CHDERVGGII GKGGTIIKNL QNETGCEIKV LDGVPDSEDR VIFISGSAHP DDRISPAQDA
401: VLRVQSRIVR AIPDSKEKTV IARLLVSSTQ IGCLLGKGGA IIAEMRKLSG AHIRILGKDQ IPKCASENEE VVQINGEFEA VQEALLQITT RLRHHHFRDA
501: FSVNHPSNPA FTDQVPPFPP YLARREFSPP GMYSNLGPSF HKFDAVGVLH PHGGFHPHDD RAPFMHSIHR LGIPPHIPER KPSSAPWGHQ GLIEGGVPIG
601: LADFAGGPQR RIPGFGGGNQ QAIITSTTVE VVVPRSLVPS IYGEDGGCLR QIRQISDAKI TITEPKPGAS ETVIIISGTP EQTHAAQSLI QAFVLSETES
701: P

Best Arabidopsis Sequence Match ( AT1G51580.1 )
(BLAST)

001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S

Arabidopsis Description

At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.