Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G166400.1 | Wheat | cytosol, mitochondrion, nucleus | 97.88 | 98.3 |
| TraesCS3A01G158700.1 | Wheat | nucleus | 97.74 | 98.16 |
| HORVU3Hr1G057270.16 | Barley | plastid | 94.63 | 86.34 |
| Os01t0235800-01 | Rice | cytosol | 51.27 | 77.56 |
| EES02175 | Sorghum | nucleus, plastid | 67.09 | 66.34 |
| Zm00001d009014_P004 | Maize | nucleus | 65.68 | 65.96 |
| GSMUA_Achr6P13890_001 | Banana | cytosol | 44.77 | 48.4 |
| GSMUA_Achr10P... | Banana | cytosol | 44.49 | 47.58 |
| VIT_18s0001g08280.t01 | Wine grape | cytosol | 44.49 | 44.94 |
| KRH52837 | Soybean | plastid | 39.69 | 41.57 |
| KRH62129 | Soybean | plastid | 38.98 | 40.71 |
| Solyc04g077060.2.1 | Tomato | nucleus | 26.55 | 39.75 |
| PGSC0003DMT400012623 | Potato | nucleus, plastid | 37.71 | 39.56 |
| TraesCS4B01G166500.2 | Wheat | nucleus | 21.19 | 26.64 |
| TraesCS5B01G276400.1 | Wheat | plastid | 22.46 | 25.44 |
| TraesCS5B01G551800.1 | Wheat | nucleus | 22.32 | 25.04 |
| TraesCS3B01G580700.1 | Wheat | nucleus | 22.18 | 24.88 |
| TraesCS7B01G245400.2 | Wheat | nucleus | 20.62 | 20.56 |
| TraesCS4B01G069700.1 | Wheat | nucleus | 13.84 | 19.18 |
| TraesCS1B01G181000.3 | Wheat | nucleus | 22.74 | 19.14 |
| TraesCS5B01G066800.1 | Wheat | nucleus | 13.84 | 18.85 |
| TraesCS1B01G229900.1 | Wheat | cytosol | 11.72 | 18.49 |
| TraesCS6B01G113100.1 | Wheat | cytosol | 10.59 | 16.06 |
| TraesCS1B01G155000.1 | Wheat | cytosol, mitochondrion, nucleus | 12.85 | 15.19 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G189700.1 | EnsemblPlantsGene:TraesCS3B01G189700 | Gene3D:3.30.1370.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF148 | PFAM:PF00013 | PFscan:PS50084 | SEG:seg | SMART:SM00322 | SUPFAM:SSF54791 |
| TIGR:cd00105 | TIGR:cd02396 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3B:+:201870420..201874215
Molecular Weight (calculated)
76330.0 Da
IEP (calculated)
6.511
GRAVY (calculated)
-0.425
Length
708 amino acids
Sequence
(BLAST)
(BLAST)
001: MASHAYPSKR PFQKKYSEHN GRAKWQKTKH APSQQPQLTI QPGVPLIRIL CPTEKCGNVI GKGGSIIAKI RQENGVKIRV DEAVPGCDER VIVITTAEKD
101: KEASHEQGKE NDGGTAVSAD GEHEKEKDHS KEEKDDSDNA HGKEEQDDAE RDDSKEENDD SSVAKTTKLE PERVIPSAMN AVLHVFDRIF ITESENGTGD
201: ASGQKTPVSF RLLVLDSQVG SLLGIRGSVI KQMSADSGCE IRVSKENLPL CALLKDELCQ INGELDSVRK GLNAVAQVLF THPPRESDVV PVVHPSGSSS
301: RTFNPSDGLP PGMPPNFHLP FQGPSHARGP FDTIDHRPNV APFSTFPDQR SNIPPFSAFP DALMHGNASV PPEPLTFRLL CSSDKVGSII GKGGNSIKTI
401: QKDTGCEIKI LETIPKSDDH IIIISGPAHP GDGISPAQNA ILHVQRKITP PTSNKEGPAI SRLIVSPNQV GCLLGKGGSI IAEMRKLSKA HIIVLSKDKI
501: PRGVQEIDEV VQITGDSEAI QEALMQITAR LRNNLFRDRM ASMGPSMQPP FGLLDPQFGA FPGSHESTSP RIYPNASQFH KDFMGRPLDE MSAPWTTKGM
601: QDVGDPMSIS GIPGMAHRGM GGFSGPVHSS RPIITGNIMV PRLVIPALCG HDGGCLNMIR EFSGAKITID EPLADSMDTP VMISGTPDQM HAARSLVQAF
701: VLSEPPAP
101: KEASHEQGKE NDGGTAVSAD GEHEKEKDHS KEEKDDSDNA HGKEEQDDAE RDDSKEENDD SSVAKTTKLE PERVIPSAMN AVLHVFDRIF ITESENGTGD
201: ASGQKTPVSF RLLVLDSQVG SLLGIRGSVI KQMSADSGCE IRVSKENLPL CALLKDELCQ INGELDSVRK GLNAVAQVLF THPPRESDVV PVVHPSGSSS
301: RTFNPSDGLP PGMPPNFHLP FQGPSHARGP FDTIDHRPNV APFSTFPDQR SNIPPFSAFP DALMHGNASV PPEPLTFRLL CSSDKVGSII GKGGNSIKTI
401: QKDTGCEIKI LETIPKSDDH IIIISGPAHP GDGISPAQNA ILHVQRKITP PTSNKEGPAI SRLIVSPNQV GCLLGKGGSI IAEMRKLSKA HIIVLSKDKI
501: PRGVQEIDEV VQITGDSEAI QEALMQITAR LRNNLFRDRM ASMGPSMQPP FGLLDPQFGA FPGSHESTSP RIYPNASQFH KDFMGRPLDE MSAPWTTKGM
601: QDVGDPMSIS GIPGMAHRGM GGFSGPVHSS RPIITGNIMV PRLVIPALCG HDGGCLNMIR EFSGAKITID EPLADSMDTP VMISGTPDQM HAARSLVQAF
701: VLSEPPAP
001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S
Arabidopsis Description
At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.