Factsheet for PGSC0003DMT400012623

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 3
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g077060.2.1	Tomato	nucleus	67.56	96.41
VIT_18s0001g08280.t01	Wine grape	cytosol	64.0	61.63
KRH52837	Soybean	plastid	56.15	56.07
KRH62129	Soybean	plastid	56.0	55.75
GSMUA_Achr6P13890_001	Banana	cytosol	49.48	50.99
GSMUA_Achr10P...	Banana	cytosol	48.0	48.94
Os01t0235800-01	Rice	cytosol	32.59	47.01
Zm00001d009014_P004	Maize	nucleus	39.85	38.16
TraesCS3D01G166400.1	Wheat	cytosol, mitochondrion, nucleus	39.7	38.01
EES02175	Sorghum	nucleus, plastid	40.15	37.85
TraesCS3B01G189700.1	Wheat	nucleus	39.56	37.71
TraesCS3A01G158700.1	Wheat	nucleus	39.26	37.59
HORVU3Hr1G057270.16	Barley	plastid	38.81	33.76
PGSC0003DMT400047374	Potato	nucleus	25.04	31.71
PGSC0003DMT400003371	Potato	nucleus	25.19	31.42
PGSC0003DMT400074198	Potato	plastid	20.44	31.08
PGSC0003DMT400083772	Potato	plastid	28.74	30.17
PGSC0003DMT400087680	Potato	plastid	10.96	29.72
PGSC0003DMT400064701	Potato	nucleus	24.15	29.37
PGSC0003DMT400041750	Potato	plastid	24.89	27.41
PGSC0003DMT400076798	Potato	nucleus	25.04	27.26
PGSC0003DMT400047665	Potato	nucleus	27.26	26.82
PGSC0003DMT400038635	Potato	cytosol	4.44	20.55
PGSC0003DMT400076105	Potato	plastid	12.3	17.97
PGSC0003DMT400066836	Potato	nucleus, plastid	11.7	17.75
PGSC0003DMT400051262	Potato	nucleus	13.19	17.73
PGSC0003DMT400051668	Potato	cytosol	13.33	17.58
PGSC0003DMT400046406	Potato	cytosol	13.33	15.25

Protein Annotations

EntrezGene:102597985	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
UniProt:M1A1K0	PFAM:PF00013	EnsemblPlantsGene:PGSC0003DMG400004937	PGSC:PGSC0003DMG400004937	EnsemblPlants:PGSC0003DMT400012623	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF148	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI00029591D5	RefSeq:XP_006356802.1
SEG:seg	:	:	:	:	:

Description

Poly(RC)-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004937]

Coordinates

chr4:-:66079815..66085669

Molecular Weight (calculated)

72210.6 Da

IEP (calculated)

5.559

GRAVY (calculated)

-0.394

Length

675 amino acids

Sequence
(BLAST)

001: MSMKLTPSKR PHDQSLAETN GRGKWQKSSS FSSQRSPAKI RILCPASKID FLIGEDSSII SRIQEETGAE VRVEDSIVGC DERVIVIIGS GKEDEVGTKQ
101: FQADVEGSET NEKDSCNDEN GDKGENKASL PAENSKTEKE TESIQKALFL LFERMVEGGA EMDGGDEEGN NSSSLIIRLL VLSSQVGCLL GKGGSVIKQM
201: SSESGSQIRI LPRDKLPSCA SSSDELVQIS GEHDAVKKAL EIVARQLLGS SSGDQDFLSA DAGGPSSQSP RRPLSNREIR PPSTRPYHGQ GPASSGGFRV
301: GEAGIPGRMN PIPDALTFRL LCPDEKVGGI IGKGGSIIKA LQHETGCQIK VLEATGDSED RIIVISGPAF PDDRISLPQD AVLRIQSRIF RAAPENQDNV
401: MVAKLLVFSN QIGCLLGKGG GIIAEMRKST GAYIRIVGKD QIPKCAAENE EVIQINGDVE KVHEALLQIT ARLQNHYFRD AFPSNPGFLD QVPPFPSHMG
501: RREFSPPPGM FPNIRPPFHK FDALPPHGGF HPHDDRPPFM QNFHRPGIPP HISDRMPSSA PWGSQGRGEG GGHLGFPDYA GGPRNIGGFG GGSNPAVITS
601: TTVEVVVPRS VIPAIYGEGG GCLRQICEIS DAKVTINDPK PGATETVIII SGTPEQTNAA QSLIQAFVMV ETEGA

Best Arabidopsis Sequence Match ( AT1G51580.1 )
(BLAST)

001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S

Arabidopsis Description

At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.