Factsheet for PGSC0003DMT400076798

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g048500.2.1	Tomato	nucleus	97.26	97.73
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	74.84	74.48
KRH42565	Soybean	nucleus	70.97	70.4
KRH58669	Soybean	endoplasmic reticulum, nucleus	69.03	68.92
CDX99470	Canola	nucleus	25.16	57.56
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	58.06	55.3
CDX77643	Canola	nucleus	56.61	54.93
CDY33460	Canola	nucleus	56.61	54.76
Bra025032.1-P	Field mustard	nucleus	56.77	54.49
OQU80050	Sorghum	nucleus	53.71	52.94
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	58.39	52.39
Zm00001d024270_P001	Maize	nucleus	53.06	52.06
AT4G18375.2	Thale cress	nucleus	50.65	51.82
CDX78846	Canola	nucleus	47.9	51.74
TraesCS3B01G580700.1	Wheat	nucleus	51.94	51.03
TraesCS3D01G519700.1	Wheat	nucleus	51.94	51.03
Bra013302.1-P	Field mustard	nucleus	48.23	51.02
HORVU5Hr1G121900.1	Barley	nucleus	51.94	50.95
AT5G46190.2	Thale cress	cytosol	56.61	50.94
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	51.77	50.79
TraesCS3A01G512500.1	Wheat	nucleus	51.45	50.55
Zm00001d049390_P001	Maize	nucleus	51.45	50.55
TraesCS4A01G333900.1	Wheat	nucleus	50.81	49.84
TraesCS5B01G551800.1	Wheat	nucleus	50.65	49.76
TraesCS5D01G538200.3	Wheat	nucleus	50.32	49.52
CDX99471	Canola	nucleus	16.29	46.98
PGSC0003DMT400047374	Potato	nucleus	26.29	30.58
PGSC0003DMT400003371	Potato	nucleus	25.81	29.57
PGSC0003DMT400064701	Potato	nucleus	25.97	29.01
PGSC0003DMT400012623	Potato	nucleus, plastid	27.26	25.04
PGSC0003DMT400074198	Potato	plastid	17.26	24.1
PGSC0003DMT400083772	Potato	plastid	24.84	23.95
PGSC0003DMT400041750	Potato	plastid	23.06	23.33
PGSC0003DMT400087680	Potato	plastid	9.03	22.49
PGSC0003DMT400047665	Potato	nucleus	22.9	20.7
PGSC0003DMT400038635	Potato	cytosol	4.68	19.86
PGSC0003DMT400066836	Potato	nucleus, plastid	13.87	19.33
PGSC0003DMT400051262	Potato	nucleus	14.84	18.33
PGSC0003DMT400076105	Potato	plastid	13.39	17.97
PGSC0003DMT400051668	Potato	cytosol	14.35	17.38
PGSC0003DMT400046406	Potato	cytosol	13.39	14.07

Protein Annotations

EntrezGene:102583330	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
UniProt:M1CXE6	PFAM:PF00013	EnsemblPlantsGene:PGSC0003DMG400029870	PGSC:PGSC0003DMG400029870	EnsemblPlants:PGSC0003DMT400076798	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF137	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0002956186	RefSeq:XP_006355411.1
RefSeq:XP_015167839.1	RefSeq:XP_015167840.1	SEG:seg	:	:	:

Description

KH domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029870]

Coordinates

chr8:-:13205747..13213772

Molecular Weight (calculated)

66702.8 Da

IEP (calculated)

8.067

GRAVY (calculated)

-0.291

Length

620 amino acids

Sequence
(BLAST)

001: MGETGKRSRR DDGDNKNQKR RTDRDEKSDD ELIVYRILCP NNVIGSVIGK NGKVINSIRS ETKAKVKVVD PFPGAKDRVI LIYCYVKEKE DVEVDQEFNE
101: KKPLCTAQDA LLKVYTAIAN ALAAIGESDK KRKDKEECQL LAPSSQSANI IGKSGTTIKK LRSKLRANIK VVARDASDPT HSCALEFDNF VLITGDPESV
201: RRSLFAISAI MYKFTPKEEI PLTTNVPEVR PSIIIPSDVP IYPGAGIYPN VDPIMPSRSV PSVLGTTQIP ELPGYVDAGS TWPIYSSGLP MVSGYSGASQ
301: TEELTIRVLC PTNNIGRVIG KGGASIKSVR QTSGARIEVC DAKADRDQCI ITVISTESVD DLKSMAVEAV LLLQGKINDE DEDTVTFRLL VPSKIIGCII
401: GKGGSIVNEI RKRTRADVRI SKGERPKCAD SNDELVEVSG EVSSVRDALI QIVLRLRDDV IKGREGNHNP SAGADSLRAG GTGFSLAPVL PNVPPAAPLS
501: YEHRIETGNG VGMRSSGSRY GHESLSMGDD SYGTFSSYSS KLYGGLPPPS AVEMVIPGHA VGKVMGKGGS NIDNIRKISG AAVDIIDSKS SRGDQIAIIS
601: GTQEQKRAAE NLIQAFIMAT

Best Arabidopsis Sequence Match ( AT5G46190.3 )
(BLAST)

001: MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G46190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.