Factsheet for Zm00001d024270_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049390_P001	Maize	nucleus	89.4	89.54
TraesCS3D01G519700.1	Wheat	nucleus	72.47	72.58
TraesCS3B01G580700.1	Wheat	nucleus	72.47	72.58
TraesCS3A01G512500.1	Wheat	nucleus	72.15	72.27
TraesCS5D01G538200.3	Wheat	nucleus	71.84	72.06
TraesCS4A01G333900.1	Wheat	nucleus	71.99	71.99
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	71.68	71.68
TraesCS5B01G551800.1	Wheat	nucleus	71.36	71.47
HORVU5Hr1G121900.1	Barley	nucleus	71.2	71.2
PGSC0003DMT400076798	Potato	nucleus	52.06	53.06
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	54.59	53.0
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	51.74	52.49
KRH42565	Soybean	nucleus	51.9	52.48
Solyc08g048500.2.1	Tomato	nucleus	51.11	52.35
KRH58669	Soybean	endoplasmic reticulum, nucleus	50.95	51.85
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	55.7	50.94
CDX99470	Canola	nucleus	20.57	47.97
CDX99471	Canola	nucleus	16.14	47.44
CDX78846	Canola	nucleus	41.3	45.47
CDY33460	Canola	nucleus	46.04	45.4
CDX77643	Canola	nucleus	45.57	45.07
Bra025032.1-P	Field mustard	nucleus	46.04	45.05
Bra013302.1-P	Field mustard	nucleus	41.61	44.88
AT4G18375.2	Thale cress	nucleus	42.41	44.22
AT5G46190.2	Thale cress	cytosol	44.94	41.22
Zm00001d029328_P002	Maize	nucleus	24.37	28.47
Zm00001d009014_P004	Maize	nucleus	25.0	22.41
Zm00001d006055_P002	Maize	plastid	21.52	21.79
Zm00001d013963_P002	Maize	nucleus	27.37	21.2
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	14.56	20.86
Zm00001d046033_P001	Maize	nucleus	21.99	20.84
Zm00001d029973_P001	Maize	plasma membrane	14.56	20.54
Zm00001d019538_P002	Maize	plastid	21.2	19.85
Zm00001d037055_P003	Maize	nucleus	21.99	18.78
Zm00001d003290_P002	Maize	mitochondrion	6.65	18.34
Zm00001d030968_P006	Maize	extracellular	14.56	18.11
Zm00001d032597_P006	Maize	golgi, plasma membrane	27.85	17.85
Zm00001d015093_P001	Maize	cytosol	12.18	16.45
Zm00001d010815_P001	Maize	mitochondrion	7.44	13.43
Zm00001d013712_P003	Maize	cytosol, plastid, vacuole	13.92	13.39
Zm00001d014180_P004	Maize	cytosol	12.34	12.06

Protein Annotations

EntrezGene:100384498	Gene3D:3.30.1370.10	MapMan:35.1	ProteinID:AQK40921.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	UniProt:K7UEH3	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF137	SMART:SM00322
SUPFAM:SSF54791	UniParc:UPI0001CA9913	EnsemblPlantsGene:Zm00001d024270	EnsemblPlants:Zm00001d024270_P001	EnsemblPlants:Zm00001d024270_T001	SEG:seg

Description

RNA-binding KH domain-containing protein

Coordinates

chr10:+:60598911..60606190

Molecular Weight (calculated)

68937.0 Da

IEP (calculated)

7.528

GRAVY (calculated)

-0.404

Length

632 amino acids

Sequence
(BLAST)

001: MRQQTGKRPS QHREYEREER KDQHKRPFPR AQESSNNDGL VLYRILCPDS LIGSVIGKHG NVINAIRHQT SAKVKVVDPY PGADKRVILV YCYVKHRDLD
101: AEGDDNEPVC AAQDALLRVH NAIVDALQTL HKNHKDSDKK STEEANILVP ASQASNVIGK SGAVIKHLRS TSRAFIKVSP KDPSDPTHSC AMSFDNFVQI
201: TGGAEAVKKA LFGVSTIIYK HPSKENIPLE TSIPDPTPSI IIPSELPVYP ASNFYSAPDA AIPSVHPSMS VLGSTRHVPE LAVPADDHGR LPIYQSILPV
301: IPTYSAPKCS GELEFRVLCP GGKIGLVIGR GGATIKNIRQ ESGARIDVDD AKNDKEESII TIISTESTDD VKSAAVEAVL LLQAKINDSE DDRMNLRLLV
401: PNKVIGCLIG RGGSIVNDMR KKTKANILIS KGDKPRRASS SDELVEVSGE ADKLRDALVQ IILRLREAVL KESVESQNSD RDGQLTVAAS DSLYGSSLPL
501: PALLPHNQQI APLGYDRRGE PERALEVFPR TSSYGYSSMQ VTDDGYGGLP SYASKAYEEH VPRLEMTVPA SGISKVMGKH GTNLDNIRKI SGAHIEIIEP
601: KSSRHEHIAY ISGTSEQRHS AENLIKAFIM ST

Best Arabidopsis Sequence Match ( AT5G46190.3 )
(BLAST)

001: MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G46190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.