Factsheet for VIT_10s0003g03860.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42565	Soybean	nucleus	77.21	76.96
KRH58669	Soybean	endoplasmic reticulum, nucleus	75.44	75.68
PGSC0003DMT400076798	Potato	nucleus	74.48	74.84
Solyc08g048500.2.1	Tomato	nucleus	73.68	74.39
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	63.56	60.83
CDX99470	Canola	nucleus	25.52	58.67
CDY33460	Canola	nucleus	60.03	58.35
CDX77643	Canola	nucleus	59.71	58.22
Bra025032.1-P	Field mustard	nucleus	60.35	58.2
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	64.21	57.89
CDX78846	Canola	nucleus	50.72	55.05
AT4G18375.2	Thale cress	nucleus	53.45	54.95
AT5G46190.2	Thale cress	cytosol	60.35	54.57
Bra013302.1-P	Field mustard	nucleus	50.88	54.1
OQU80050	Sorghum	nucleus	53.77	53.26
TraesCS3B01G580700.1	Wheat	nucleus	52.97	52.3
TraesCS3D01G519700.1	Wheat	nucleus	52.81	52.14
HORVU5Hr1G121900.1	Barley	nucleus	52.81	52.06
TraesCS3A01G512500.1	Wheat	nucleus	52.65	51.98
TraesCS5B01G551800.1	Wheat	nucleus	52.49	51.82
Zm00001d024270_P001	Maize	nucleus	52.49	51.74
CDX99471	Canola	nucleus	17.82	51.63
TraesCS5D01G538200.3	Wheat	nucleus	52.17	51.59
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	52.33	51.58
TraesCS4A01G333900.1	Wheat	nucleus	52.33	51.58
Zm00001d049390_P001	Maize	nucleus	51.69	51.03
VIT_14s0108g01040.t01	Wine grape	nucleus	27.29	31.02
VIT_01s0026g02650.t01	Wine grape	nucleus	27.13	29.55
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	9.95	26.27
VIT_14s0006g02960.t01	Wine grape	nucleus, plastid	28.41	26.18
VIT_14s0006g00030.t01	Wine grape	cytosol	11.88	26.15
VIT_03s0038g00420.t01	Wine grape	plastid	27.13	26.08
VIT_18s0001g08280.t01	Wine grape	cytosol	28.57	25.39
VIT_16s0098g01660.t01	Wine grape	nucleus	26.81	25.26
VIT_15s0021g01940.t01	Wine grape	nucleus	13.96	25.14
VIT_09s0054g00450.t01	Wine grape	plastid	27.45	24.29
VIT_09s0002g00070.t01	Wine grape	mitochondrion	4.98	24.22
VIT_07s0141g00800.t01	Wine grape	cytosol	13.8	19.86
VIT_14s0081g00440.t01	Wine grape	cytosol	15.89	19.37
VIT_11s0052g00030.t01	Wine grape	plastid	13.64	18.24

Protein Annotations

EntrezGene:100261680	wikigene:100261680	Gene3D:3.30.1370.10	MapMan:35.1	EMBL:AM435047	ProteinID:CAN73780
ProteinID:CAN73780.1	ProteinID:CCB55808	ProteinID:CCB55808.1	UniProt:F6HLT4	EMBL:FN595992	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	EntrezGene:LOC100261680	wikigene:LOC100261680	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288
PANTHER:PTHR10288:SF137	SMART:SM00322	SUPFAM:SSF54791	TIGR:TC55554	TIGR:TC66327	UniParc:UPI00015CAD3A
ArrayExpress:VIT_10s0003g03860	EnsemblPlantsGene:VIT_10s0003g03860	EnsemblPlants:VIT_10s0003g03860.t01	unigene:Vvi.1539	RefSeq:XP_002278367	RefSeq:XP_002278367.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:6601036..6607533

Molecular Weight (calculated)

66671.4 Da

IEP (calculated)

6.148

GRAVY (calculated)

-0.218

Length

623 amino acids

Sequence
(BLAST)

001: MGETGKRFRS QRDQDGDNKI QKRRVNERDE KGSDELIVYR ILCPDGVIGS VIGKSGKVIN SIRQDTRAKI KVVDPFPGAK DRVITIYCYV KEKEEVEVDD
101: EFNDKQPLCP AQDALLKVHA AIVNAVASLE NSDKKKKDKE ECQILVPSSQ SANVIGKAGA TIKRLRSKTR ANIKITAKDS TDPSHSCAME FDNFVLIAGD
201: SEAVKKALFA ISAIMYKFTP REEIPLDTTV PEAPPSIIIP SDVPIYPAGG FYPSADSIVS ARSVPPVLAA THVPELQGYS DMGSTWPVYS SNLPVVSGYG
301: ASRSEELIIR VLCPFDKIGR VIGRGGSSIK SVREASGAHV EVDDTKADRD ECLITVTSTE SVDDLKSMAV EAVLLLQAKI NDEDDDTVAI RLLVPSKIIG
401: CIIGKSGSII NEIRKRTRAD VRISKSERPK CADANDELIE VVGEVGSVRD ALVQIVLRLR DDALKDRDTG HNTSAGTDSL YSGGAGLSVS SVLPSAPPVA
501: PLSYDQRAET GSGLGLLSSS SLYGYGSLSV GENAYGSMSS YSSKLYGGLP TPSTFDMVIP ANAVGKVMGK GGANIANIRK ISGAVIEISD SKSSRGDRVA
601: LISGTPEQKR TAENLIQAFI MAT

Best Arabidopsis Sequence Match ( AT5G46190.3 )
(BLAST)

001: MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G46190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.