Factsheet for VIT_16s0098g01660.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g06400.t01
VIT_08s0056g00160.t01
VIT_11s0016g04280.t01
VIT_13s0019g05080.t01
VIT_17s0000g08810.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53060.1	VIT_08s0056g00160.t01	AT3G60360.1	21798944
AT5G53060.1	VIT_17s0000g08810.t01	AT4G24680.1	21798944
AT5G53060.1	VIT_13s0019g05080.t01	AT5G04280.1	21798944
AT5G53060.1	VIT_08s0007g06400.t01	AT5G06770.1	21798944
AT5G53060.1	VIT_11s0016g04280.t01	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53532	Soybean	nucleus	70.35	71.87
KRH64403	Soybean	nucleus	69.44	71.27
Solyc03g082980.2.1	Tomato	nucleus	68.38	67.66
PGSC0003DMT400047665	Potato	nucleus	67.78	65.31
AT5G53060.1	Thale cress	nucleus	60.36	61.2
CDX96185	Canola	nucleus	59.0	60.84
Bra003085.1-P	Field mustard	nucleus	58.55	60.56
CDY56908	Canola	nucleus	58.25	60.53
CDY49453	Canola	nucleus	58.09	59.81
Bra022624.1-P	Field mustard	nucleus	59.61	59.61
CDY27030	Canola	nucleus	59.91	59.55
GSMUA_Achr2P15270_001	Banana	nucleus	57.34	54.53
HORVU7Hr1G082230.1	Barley	nucleus	48.26	50.96
Os06t0342500-01	Rice	cytosol	50.23	50.15
TraesCS7A01G333800.1	Wheat	nucleus	49.77	49.25
TraesCS7D01G341400.1	Wheat	nucleus	49.62	48.74
Zm00001d046033_P001	Maize	nucleus	48.41	47.98
KXG20038	Sorghum	nucleus	48.41	47.9
TraesCS7B01G245400.2	Wheat	nucleus	49.32	45.92
Zm00001d037055_P003	Maize	nucleus	47.35	42.3
VIT_09s0002g00070.t01	Wine grape	mitochondrion	5.75	29.69
VIT_14s0108g01040.t01	Wine grape	nucleus	23.3	28.1
VIT_01s0026g02650.t01	Wine grape	nucleus	23.6	27.27
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	25.26	26.81
VIT_18s0001g08280.t01	Wine grape	cytosol	28.29	26.68
VIT_03s0038g00420.t01	Wine grape	plastid	25.87	26.39
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	8.93	25.0
VIT_14s0006g02960.t01	Wine grape	nucleus, plastid	25.57	25.0
VIT_09s0054g00450.t01	Wine grape	plastid	26.48	24.86
VIT_15s0021g01940.t01	Wine grape	nucleus	12.41	23.7
VIT_14s0006g00030.t01	Wine grape	cytosol	10.14	23.67
VIT_07s0141g00800.t01	Wine grape	cytosol	11.8	18.01
VIT_11s0052g00030.t01	Wine grape	plastid	11.8	16.74
VIT_14s0081g00440.t01	Wine grape	cytosol	12.56	16.24

Protein Annotations

EntrezGene:100258944	wikigene:100258944	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	ProteinID:CCB48055
ProteinID:CCB48055.1	UniProt:F6H7A0	EMBL:FN595247	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006412	GO:GO:0006950	GO:GO:0006970	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009628
GO:GO:0009719	GO:GO:0009867	GO:GO:0009987	GO:GO:0010286	GO:GO:0010445	GO:GO:0010468
GO:GO:0019538	GO:GO:0031053	GO:GO:0040029	GO:GO:0070878	GO:GO:1900150	InterPro:IPR036612
InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EntrezGene:LOC100258944	wikigene:LOC100258944	PFAM:PF00013
PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF134	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0001985021
ArrayExpress:VIT_16s0098g01660	EnsemblPlantsGene:VIT_16s0098g01660	EnsemblPlants:VIT_16s0098g01660.t01	unigene:Vvi.12483	RefSeq:XP_002272224	RefSeq:XP_002272224.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:+:21779445..21784564

Molecular Weight (calculated)

72433.4 Da

IEP (calculated)

6.126

GRAVY (calculated)

-0.470

Length

661 amino acids

Sequence
(BLAST)

001: MDRSRSKRGY FYEQDYDSET LGRTKPRYNN NNNHGGHHYN TNSHHRRGGA GAGRASKLQD SSVMVTTSYR ILCHDVKAGG VIGKSGSIIK SIRQHTGAWI
101: NVHELIPGDE ERIIEISDTR RRDPEGRMPQ FSPAQEALFM IHDRILESDA GFGNGFGGNG DDDDDFGPRG GGNRVATRMV VSRMHVGCLL GKGGKIIEQM
201: RIETKTQIRI LPRDHNLPRC VSMSEEIVQV VGDVNAVKNA IANISSRLRE SQHRDRSHFH GRIQSSPERF FPPDDDYSHM NNAPRRMPID GNSFGSRVST
301: GLVGTRSNSF ASRTSGYTLE SGAAPIADNA QQFLGEDIVF RILCPVDKVE CVVGESDGII ELLQNEIGVD VKVADHVAGS NEQIIVITSE EGPDDELFPA
401: QEALLHIQTR IVNLLPDKEN VITTRLLVPS SEIGCFEGRD CSLSEMRRLT GANIQIVPRE QLPAFISGTD ELLEIVGEIK AARDALVEVT SRLRSYLYRE
501: FFPKDMPPPS ISAPGSLEAS SPNNITPARE GHTASDPPTT NYQNVQAIAS VQPSKDSGGT GGETVKQNET VPSVLNRIPV TLVTRSTLEV VIPEHAVPKL
601: ITRSKNKLAQ ISEWSGANVT LLEDRLEATG KIIQISGTPE QTEKAQSLLQ GFILSISEDG P

Best Arabidopsis Sequence Match ( AT5G53060.1 )
(BLAST)

001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP

Arabidopsis Description

RCF3RNA-binding KH domain-containing protein RCF3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.