Factsheet for Solyc03g082980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g063200.2.1
Solyc03g071560.2.1
Solyc03g112660.2.1
Solyc10g078750.1.1
Solyc10g079430.1.1
Solyc10g080480.1.1
Solyc11g008210.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53060.1	Solyc10g079430.1.1	AT3G60360.1	21798944
AT5G53060.1	Solyc03g112660.2.1	AT4G24680.1	21798944
AT5G53060.1	Solyc03g071560.2.1	AT5G04280.1	21798944
AT5G53060.1	Solyc11g008210.1.1	AT5G04280.1	21798944
AT5G53060.1	Solyc03g063200.2.1	AT5G06770.1	21798944
AT5G53060.1	Solyc10g078750.1.1	AT5G06770.1	21798944
AT5G53060.1	Solyc10g080480.1.1	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047665	Potato	nucleus	97.9	95.34
VIT_16s0098g01660.t01	Wine grape	nucleus	67.66	68.38
KRH64403	Soybean	nucleus	65.87	68.32
KRH53532	Soybean	nucleus	66.02	68.16
CDX96185	Canola	nucleus	57.78	60.22
AT5G53060.1	Thale cress	nucleus	58.23	59.66
Bra003085.1-P	Field mustard	nucleus	55.69	58.22
CDY56908	Canola	nucleus	55.39	58.18
Bra022624.1-P	Field mustard	nucleus	57.48	58.09
CDY27030	Canola	nucleus	57.63	57.89
CDY49453	Canola	nucleus	55.09	57.32
GSMUA_Achr2P15270_001	Banana	nucleus	55.09	52.95
HORVU7Hr1G082230.1	Barley	nucleus	46.71	49.84
TraesCS7A01G333800.1	Wheat	nucleus	47.6	47.6
Os06t0342500-01	Rice	cytosol	47.16	47.58
TraesCS7D01G341400.1	Wheat	nucleus	47.6	47.25
Zm00001d046033_P001	Maize	nucleus	47.16	47.23
KXG20038	Sorghum	nucleus	47.01	47.01
TraesCS7B01G245400.2	Wheat	nucleus	47.6	44.79
Zm00001d037055_P003	Maize	nucleus	45.96	41.49
Solyc04g077060.2.1	Tomato	nucleus	19.01	26.85
Solyc12g055790.1.1	Tomato	nucleus	9.73	26.1
Solyc01g106020.2.1	Tomato	plastid	25.15	26.01
Solyc05g007810.2.1	Tomato	nucleus	19.76	24.81
Solyc02g067210.2.1	Tomato	nucleus	22.01	23.86
Solyc11g010840.1.1	Tomato	plastid	21.86	23.82
Solyc12g055780.1.1	Tomato	cytosol, nucleus	13.17	23.78
Solyc08g048500.2.1	Tomato	nucleus	21.26	23.01
Solyc02g088120.2.1	Tomato	nucleus	17.96	22.86
Solyc03g034200.2.1	Tomato	nucleus	23.35	22.07
Solyc01g097010.2.1	Tomato	nucleus	10.48	19.28
Solyc01g090480.2.1	Tomato	nucleus	12.72	19.14
Solyc05g041740.1.1	Tomato	plastid	5.69	18.1
Solyc08g074330.1.1	Tomato	plastid	5.99	17.62
Solyc05g043210.1.1	Tomato	plastid	5.99	15.81
Solyc09g066120.2.1	Tomato	nucleus	11.53	15.65
Solyc07g008490.2.1	Tomato	nucleus	10.63	14.73
Solyc05g042180.1.1	Tomato	plastid	5.99	14.65
Solyc06g084000.2.1	Tomato	nucleus	4.94	13.92
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	6.44	13.44
Solyc06g084010.2.1	Tomato	nucleus	6.44	13.31

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006412	GO:GO:0006950	GO:GO:0006970	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009628
GO:GO:0009719	GO:GO:0009867	GO:GO:0009987	GO:GO:0010286	GO:GO:0010445	GO:GO:0010468
GO:GO:0019538	GO:GO:0031053	GO:GO:0040029	GO:GO:0070878	GO:GO:1900150	InterPro:IPR036612
UniProt:K4BI74	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF134	SMART:SM00322	SUPFAM:SSF54791	EnsemblPlantsGene:Solyc03g082980.2	EnsemblPlants:Solyc03g082980.2.1
UniParc:UPI000276891F	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:52827392..52834115

Molecular Weight (calculated)

73482.3 Da

IEP (calculated)

6.431

GRAVY (calculated)

-0.476

Length

668 amino acids

Sequence
(BLAST)

001: MDRSRSKRYY YDQDYESENL PRTKQRYNNP HHYAPTAHHR RPVSGGGGGG RKMQDPALMV TTTYRILCHD VKAGGVIGKS GSIIKAIRQH TGAWVNVHEL
101: IPGDDERIIE ISDTRRRDPD GRMPAFSPAQ EALLMIHERI LDSDSGGGGY SGGMDVEEEF RMRGVSGSNR AVTRLVVTRM HVGCLLGKGG KIIEQMRIET
201: KTHIRILPRD HSLPRCVSMS EEIVQVVGEV NAVKKAVEII SSRLRESQHR DRGHFPGRPH SPERFLPPDD EFIPHMNSTA RRLSENGSAF GSRLPAGMSG
301: GRSNNYSSSS SGYAIESGIA PNNDNGQVMY VEDLVFRILC PVDKVDTVAG ESDGIIELLQ NEIGVDVKIL NPVAGSDEQV IIISSDEGPD DELFPAQEAL
401: LHIQTRIVDL VPEKENVITT RLVVQTDEVE CLGGRDGLLS DMQKITGATV KILPKEELPP CVSRTDEVIQ IVGEIKAARE ALVEVTSRLR SFTYRNFFQK
501: DIPSPAIPAS SPARSTIGAD KNSFNNTSPS QQNYSVNDVP TSIYQNTPAK PISQPVKETG ASASEITKQN ESERREDIPS GLNRMHVTLV TRSILEVVIP
601: PHAAPKLITK SRNKLAQISE LSGANVKLIE DRPEVTDKII QISGTPEQAE RAQSLLQGFI LSTLEDGP

Best Arabidopsis Sequence Match ( AT5G53060.1 )
(BLAST)

001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP

Arabidopsis Description

RCF3RNA-binding KH domain-containing protein RCF3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.