Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g071560.2.1 | |
| Solyc11g008210.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06770.1 | Solyc03g071560.2.1 | AT5G04280.1 | 21798944 |
| AT5G06770.1 | Solyc11g008210.1.1 | AT5G04280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400060957 | Potato | cytosol | 95.16 | 93.54 |
| Solyc10g078750.1.1 | Tomato | nucleus | 76.82 | 75.77 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 68.17 | 66.33 |
| KRG95373 | Soybean | cytosol | 66.78 | 65.42 |
| KRH67059 | Soybean | cytosol, nucleus | 66.44 | 65.08 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 30.8 | 64.96 |
| KRH67057 | Soybean | nucleus | 65.74 | 64.41 |
| KRH71867 | Soybean | nucleus | 65.05 | 63.73 |
| CDY47892 | Canola | cytosol | 49.48 | 62.17 |
| CDY01104 | Canola | cytosol | 51.21 | 61.67 |
| CDX73836 | Canola | cytosol | 49.48 | 60.85 |
| Bra034776.1-P | Field mustard | cytosol | 51.21 | 60.66 |
| CDY08453 | Canola | cytosol | 51.21 | 60.66 |
| Bra001436.1-P | Field mustard | cytosol | 48.79 | 60.0 |
| CDY00756 | Canola | cytosol | 48.79 | 59.75 |
| AT5G06770.1 | Thale cress | cytosol | 49.48 | 59.58 |
| Solyc01g014850.2.1 | Tomato | nucleus | 50.87 | 58.8 |
| AT3G12130.1 | Thale cress | cytosol | 50.17 | 58.47 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 59.17 | 57.19 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 59.52 | 56.58 |
| Bra038697.1-P | Field mustard | cytosol, mitochondrion, nucleus | 46.71 | 55.1 |
| Os02t0194200-01 | Rice | nucleus | 56.75 | 54.67 |
| Solyc03g063200.2.1 | Tomato | nucleus | 30.8 | 54.6 |
| EES04688 | Sorghum | nucleus | 54.33 | 53.22 |
| TraesCS6B01G194300.1 | Wheat | cytosol | 54.67 | 53.2 |
| KXG20371 | Sorghum | cytosol | 56.4 | 53.09 |
| Zm00001d036796_P004 | Maize | extracellular | 54.67 | 52.49 |
| Os06t0618100-01 | Rice | nucleus | 46.71 | 52.12 |
| TraesCS6A01G166900.1 | Wheat | cytosol | 54.67 | 51.97 |
| TraesCS6D01G155400.1 | Wheat | cytosol | 54.33 | 51.64 |
| TraesCS7D01G396100.2 | Wheat | cytosol | 53.29 | 51.33 |
| TraesCS7B01G302400.1 | Wheat | cytosol | 53.29 | 51.33 |
| TraesCS7A01G402300.1 | Wheat | cytosol | 53.29 | 51.33 |
| Solyc01g014860.2.1 | Tomato | nucleus | 8.65 | 51.02 |
| Os04t0665700-01 | Rice | nucleus | 54.33 | 50.81 |
| Zm00001d001933_P001 | Maize | nucleus | 51.9 | 48.86 |
| CDY72512 | Canola | nucleus | 34.95 | 48.79 |
| EES11610 | Sorghum | cytosol | 51.56 | 48.69 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 51.21 | 48.21 |
| Solyc01g073940.2.1 | Tomato | nucleus | 48.1 | 48.1 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 50.87 | 48.04 |
| TraesCS2D01G488300.1 | Wheat | nucleus, plastid | 50.52 | 48.03 |
| HORVU6Hr1G033840.5 | Barley | mitochondrion | 54.67 | 46.33 |
| CDY05002 | Canola | cytosol | 24.57 | 45.51 |
| Bra028719.1-P | Field mustard | cytosol | 24.57 | 45.51 |
| TraesCS6D01G155300.1 | Wheat | mitochondrion | 48.1 | 45.42 |
| TraesCS6D01G155200.1 | Wheat | cytosol | 31.83 | 44.02 |
| Zm00001d046740_P001 | Maize | plastid | 49.48 | 42.06 |
| HORVU6Hr1G025870.1 | Barley | cytosol | 26.3 | 40.0 |
| TraesCS6B01G194200.1 | Wheat | cytosol, mitochondrion, plastid | 26.99 | 40.0 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 48.44 | 39.11 |
| TraesCS6A01G166800.1 | Wheat | cytosol | 37.72 | 35.16 |
| TraesCS6A01G166700.1 | Wheat | cytosol | 37.02 | 33.97 |
| Zm00001d032312_P001 | Maize | cytosol | 16.26 | 31.76 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 | InterPro:IPR036612 | UniProt:K4D2T8 | InterPro:KH_dom |
| InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | PFAM:PF00013 | PFAM:PF00642 | PFscan:PS50084 | PFscan:PS50103 |
| PANTHER:PTHR10288 | PANTHER:PTHR10288:SF5 | SMART:SM00322 | SMART:SM00356 | SUPFAM:SSF54791 | SUPFAM:SSF90229 |
| EnsemblPlantsGene:Solyc10g080480.1 | EnsemblPlants:Solyc10g080480.1.1 | UniParc:UPI00027694AE | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg |
Description
No Description!
Coordinates
chr10:+:61735873..61739373
Molecular Weight (calculated)
30305.9 Da
IEP (calculated)
9.470
GRAVY (calculated)
-0.475
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYRKRTRND VGANVNGGVK KYKPEVDSIS GGVGSKSKPC TKFFSTAGCP FGESCHFLHY VPGGYSAATQ MMKLTPAPSL RNAAAPPYSN GNAPSLKTKL
101: CNRFSTAEGC KFGDKCNYAH GEWELGKPTI PSQEDPRAMG FGSMPGRFGG GRVESAASFG TSATAKISVD ASLAGAIIGK GGVNSKQICR QTGAKLAIRD
201: HETDANLRNI ELEGTFEQIS QASAMVRELI NSLGPVGGGG RTHGNSGGAA PPMNNLKTKL CENFAKGSCT FGDRCHFAHG AAELRKTGE
101: CNRFSTAEGC KFGDKCNYAH GEWELGKPTI PSQEDPRAMG FGSMPGRFGG GRVESAASFG TSATAKISVD ASLAGAIIGK GGVNSKQICR QTGAKLAIRD
201: HETDANLRNI ELEGTFEQIS QASAMVRELI NSLGPVGGGG RTHGNSGGAA PPMNNLKTKL CENFAKGSCT FGDRCHFAHG AAELRKTGE
001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.