Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- cytosol 2
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400061829 | Potato | plastid | 80.8 | 90.58 |
| KRG93085 | Soybean | cytosol | 66.4 | 55.89 |
| KRH36330 | Soybean | nucleus | 66.4 | 55.89 |
| VIT_06s0004g01290.t01 | Wine grape | cytosol | 67.2 | 55.81 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 61.2 | 51.17 |
| Solyc10g080480.1.1 | Tomato | nucleus | 58.8 | 50.87 |
| Solyc10g078750.1.1 | Tomato | nucleus | 58.0 | 49.49 |
| Os06t0618100-01 | Rice | nucleus | 51.2 | 49.42 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 59.6 | 49.01 |
| EES04688 | Sorghum | nucleus | 54.8 | 46.44 |
| Os02t0194200-01 | Rice | nucleus | 55.6 | 46.33 |
| Os04t0665700-01 | Rice | nucleus | 56.4 | 45.63 |
| TraesCS2D01G488300.1 | Wheat | nucleus, plastid | 54.8 | 45.07 |
| TraesCS6B01G194300.1 | Wheat | cytosol | 53.2 | 44.78 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 54.8 | 44.63 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 54.4 | 44.44 |
| TraesCS7B01G302400.1 | Wheat | cytosol | 52.8 | 44.0 |
| EES11610 | Sorghum | cytosol | 53.6 | 43.79 |
| TraesCS6A01G166900.1 | Wheat | cytosol | 53.2 | 43.75 |
| TraesCS6D01G155400.1 | Wheat | cytosol | 53.2 | 43.75 |
| TraesCS7D01G396100.2 | Wheat | cytosol | 52.4 | 43.67 |
| TraesCS7A01G402300.1 | Wheat | cytosol | 52.4 | 43.67 |
| Zm00001d001933_P001 | Maize | nucleus | 53.6 | 43.65 |
| Zm00001d036796_P004 | Maize | extracellular | 52.0 | 43.19 |
| KXG20371 | Sorghum | cytosol | 52.8 | 43.0 |
| Solyc01g073940.2.1 | Tomato | nucleus | 49.6 | 42.91 |
| TraesCS6D01G155300.1 | Wheat | mitochondrion | 51.2 | 41.83 |
| HORVU6Hr1G025870.1 | Barley | cytosol | 30.4 | 40.0 |
| HORVU6Hr1G033840.5 | Barley | mitochondrion | 52.0 | 38.12 |
| Zm00001d046740_P001 | Maize | plastid | 50.8 | 37.35 |
| TraesCS6D01G155200.1 | Wheat | cytosol | 30.8 | 36.84 |
| TraesCS6B01G194200.1 | Wheat | cytosol, mitochondrion, plastid | 28.0 | 35.9 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 50.4 | 35.2 |
| Zm00001d032312_P001 | Maize | cytosol | 18.8 | 31.76 |
| Solyc03g063200.2.1 | Tomato | nucleus | 20.0 | 30.67 |
| TraesCS6A01G166800.1 | Wheat | cytosol | 35.2 | 28.39 |
| TraesCS6A01G166700.1 | Wheat | cytosol | 31.6 | 25.08 |
| Solyc01g014860.2.1 | Tomato | nucleus | 0.8 | 4.08 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 | InterPro:IPR036612 | UniProt:K4AUB9 | InterPro:KH_dom |
| InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | PFAM:PF00013 | PFAM:PF00642 | PFAM:PF14608 | PFscan:PS50084 |
| PFscan:PS50103 | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF154 | SMART:SM00322 | SMART:SM00356 | SUPFAM:SSF54791 |
| SUPFAM:SSF90229 | EnsemblPlantsGene:Solyc01g014850.2 | EnsemblPlants:Solyc01g014850.2.1 | UniParc:UPI00027624F4 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:15586445..15597388
Molecular Weight (calculated)
26670.5 Da
IEP (calculated)
8.500
GRAVY (calculated)
-0.400
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MFFSGCPFGE GCHFLHYVPG GLKAVTQMLG SNPALPAAPR NSIAPPSFPD GSSSPVVKTR LCTKFNTAEG CKFGDQCRFA HGDWELGRPA APLHEESHGM
101: FQMHGRYGSR PETNPTGLGA AASFGSSATA KISVDASLAG RIIGKGGVNS KHICRVTGAK FSIRDNESDP NLRNIELEGT IDQIEQASRM VRELIQSVTT
201: SAAPPMKNSS SSVTSNYKTK ICENFTKSTC TFGEKCHFAH GAEELRKSGP
101: FQMHGRYGSR PETNPTGLGA AASFGSSATA KISVDASLAG RIIGKGGVNS KHICRVTGAK FSIRDNESDP NLRNIELEGT IDQIEQASRM VRELIQSVTT
201: SAAPPMKNSS SSVTSNYKTK ICENFTKSTC TFGEKCHFAH GAEELRKSGP
001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.