Factsheet for Os02t0194200-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0681900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06770.1	Os03t0681900-01	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04688	Sorghum	nucleus	83.0	84.41
TraesCS6B01G194300.1	Wheat	cytosol	79.33	80.13
TraesCS6D01G155400.1	Wheat	cytosol	80.67	79.61
TraesCS6A01G166900.1	Wheat	cytosol	80.0	78.95
Os06t0618100-01	Rice	nucleus	64.67	74.9
TraesCS6D01G155300.1	Wheat	mitochondrion	69.67	68.3
HORVU6Hr1G033840.5	Barley	mitochondrion	76.67	67.45
GSMUA_Achr1P19650_001	Banana	nucleus	64.67	63.82
VIT_13s0156g00320.t01	Wine grape	cytosol	62.67	63.51
Os04t0665700-01	Rice	nucleus	64.67	62.78
TraesCS6B01G194200.1	Wheat	cytosol, mitochondrion, plastid	40.67	62.56
CDY47892	Canola	cytosol	47.33	61.74
VIT_06s0004g01290.t01	Wine grape	cytosol	61.33	61.13
KRG95373	Soybean	cytosol	60.0	61.02
VIT_08s0007g06400.t01	Wine grape	cytosol	60.33	60.94
Bra001436.1-P	Field mustard	cytosol	47.33	60.43
CDY01104	Canola	cytosol	48.33	60.42
CDX73836	Canola	cytosol	47.0	60.0
CDY08453	Canola	cytosol	48.67	59.84
Bra034776.1-P	Field mustard	cytosol	48.67	59.84
KRH67059	Soybean	cytosol, nucleus	58.67	59.66
KRH71867	Soybean	nucleus	58.33	59.32
KRH67057	Soybean	nucleus	58.0	58.98
CDY00756	Canola	cytosol	46.33	58.9
GSMUA_Achr7P20530_001	Banana	nucleus	58.0	58.19
KRG93085	Soybean	cytosol	57.33	57.91
KRH36330	Soybean	nucleus	57.33	57.91
Solyc10g078750.1.1	Tomato	nucleus	56.0	57.34
PGSC0003DMT400060957	Potato	cytosol	56.0	57.14
Solyc10g080480.1.1	Tomato	nucleus	54.67	56.75
PGSC0003DMT400025445	Potato	cytosol	53.67	56.69
PGSC0003DMT400029683	Potato	cytosol	56.67	56.48
AT3G12130.1	Thale cress	cytosol	46.67	56.45
VIT_11s0016g04280.t01	Wine grape	cytosol	25.67	56.2
AT5G06770.1	Thale cress	cytosol	44.67	55.83
PGSC0003DMT400061829	Potato	plastid	41.33	55.61
Solyc01g014850.2.1	Tomato	nucleus	46.33	55.6
Bra038697.1-P	Field mustard	cytosol, mitochondrion, nucleus	44.67	54.69
Zm00001d053682_P001	Maize	cytosol, mitochondrion, nucleus	63.33	53.07
TraesCS6A01G166800.1	Wheat	cytosol	54.33	52.58
PGSC0003DMT400016195	Potato	cytosol	50.33	52.25
TraesCS6D01G155200.1	Wheat	cytosol	36.33	52.15
Solyc01g073940.2.1	Tomato	nucleus	49.33	51.21
Solyc01g014860.2.1	Tomato	nucleus	7.67	46.94
CDY72512	Canola	nucleus	32.0	46.38
Solyc03g063200.2.1	Tomato	nucleus	24.0	44.17
CDY05002	Canola	cytosol	22.33	42.95
Bra028719.1-P	Field mustard	cytosol	22.33	42.95
TraesCS6A01G166700.1	Wheat	cytosol	44.33	42.22

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	EntrezGene:4328599	EMBL:AK242341	ProteinID:BAD15406.1
ProteinID:BAF08090.2	ProteinID:BAS77436.1	ProteinID:EAZ22072.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlantsGene:Os02g0194200	EnsemblPlants:Os02t0194200-01	PFAM:PF00013	PFAM:PF00642
PFAM:PF14608	PFscan:PS50084	PFscan:PS50103	PANTHER:PTHR10288	PANTHER:PTHR10288:SF147	UniProt:Q7F8R0
SMART:SM00322	SMART:SM00356	SUPFAM:SSF54791	SUPFAM:SSF90229	UniParc:UPI00000A9D83	RefSeq:XP_015626985.1
InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:	:

Description

ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14K Homology, type 1, subgroup domain containing protein. (Os02t0194200-01)

Coordinates

chr2:+:5250033..5253692

Molecular Weight (calculated)

31155.2 Da

IEP (calculated)

10.139

GRAVY (calculated)

-0.532

Length

300 amino acids

Sequence
(BLAST)

001: MEVGGRKRGK PDGANGAGGK RARESESFQT GVGSKSKPCT KFFSTSGCPF GEGCHFLHHF PGGYQAVAKM TNLGGPAIAP PPGRMPMGNA VPDGPPTPTV
101: KTRLCNKYNT AEGCKWGDKC HFAHGERELG KPMLMDSSMP PPMGPRPTGH FAPPPMPSPA MSTPASFGAS ATAKISVDAS LAGGIIGRGG VNTKQISRVT
201: GAKLAIRDHE SDTNLKNIEL EGTFDQIKNA SAMVRELIVS IGGGAPPQGK KPVGGSHRGG GPGSNFKTKL CENFTKGSCT FGDRCHFAHG ENELRKSAAA

Best Arabidopsis Sequence Match ( AT3G12130.1 )
(BLAST)

001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.