Factsheet for Zm00001d053682_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007799_P001
Zm00001d013543_P009
Zm00001d019041_P001
Zm00001d033511_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06770.1	Zm00001d007799_P001	AT5G04280.1	21798944
AT5G06770.1	Zm00001d013543_P009	AT5G04280.1	21798944
AT5G06770.1	Zm00001d019041_P001	AT5G04280.1	21798944
AT5G06770.1	Zm00001d033511_P002	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04688	Sorghum	nucleus	56.42	68.47
Os02t0194200-01	Rice	nucleus	53.07	63.33
TraesCS6B01G194300.1	Wheat	cytosol	49.72	59.93
Zm00001d036796_P004	Maize	extracellular	50.0	59.47
TraesCS6D01G155400.1	Wheat	cytosol	50.28	59.21
TraesCS6A01G166900.1	Wheat	cytosol	50.0	58.88
GSMUA_Achr1P19650_001	Banana	nucleus	46.37	54.61
VIT_06s0004g01290.t01	Wine grape	cytosol	45.53	54.15
VIT_11s0016g04280.t01	Wine grape	cytosol	20.39	53.28
GSMUA_Achr7P20530_001	Banana	nucleus	44.13	52.84
VIT_13s0156g00320.t01	Wine grape	cytosol	43.58	52.7
KRH67057	Soybean	nucleus	43.3	52.54
KRH71867	Soybean	nucleus	43.02	52.2
KRH67059	Soybean	cytosol, nucleus	43.02	52.2
KRG95373	Soybean	cytosol	42.74	51.86
HORVU6Hr1G033840.5	Barley	mitochondrion	48.6	51.03
TraesCS6D01G155300.1	Wheat	mitochondrion	43.58	50.98
CDY47892	Canola	cytosol	32.68	50.87
VIT_08s0007g06400.t01	Wine grape	cytosol	41.9	50.51
KRH36330	Soybean	nucleus	41.9	50.51
Solyc01g014850.2.1	Tomato	nucleus	35.2	50.4
TraesCS6D01G155200.1	Wheat	cytosol	29.33	50.24
Solyc10g078750.1.1	Tomato	nucleus	41.06	50.17
KRG93085	Soybean	cytosol	41.62	50.17
CDY01104	Canola	cytosol	33.52	50.0
PGSC0003DMT400029683	Potato	cytosol	41.9	49.83
Bra001436.1-P	Field mustard	cytosol	32.68	49.79
PGSC0003DMT400061829	Potato	plastid	30.73	49.33
Zm00001d001933_P001	Maize	nucleus	42.18	49.19
Bra034776.1-P	Field mustard	cytosol	33.52	49.18
CDY08453	Canola	cytosol	33.52	49.18
PGSC0003DMT400060957	Potato	cytosol	40.22	48.98
PGSC0003DMT400025445	Potato	cytosol	38.83	48.94
CDX73836	Canola	cytosol	32.12	48.94
CDY00756	Canola	cytosol	32.12	48.73
Solyc10g080480.1.1	Tomato	nucleus	39.11	48.44
TraesCS6B01G194200.1	Wheat	cytosol, mitochondrion, plastid	26.26	48.21
Solyc01g073940.2.1	Tomato	nucleus	38.27	47.4
PGSC0003DMT400016195	Potato	cytosol	38.27	47.4
Zm00001d046740_P001	Maize	plastid	44.69	47.06
AT5G06770.1	Thale cress	cytosol	31.28	46.67
Bra038697.1-P	Field mustard	cytosol, mitochondrion, nucleus	31.84	46.53
AT3G12130.1	Thale cress	cytosol	32.12	46.37
TraesCS6A01G166800.1	Wheat	cytosol	35.2	40.65
CDY72512	Canola	nucleus	23.46	40.58
Solyc03g063200.2.1	Tomato	nucleus	18.44	40.49
CDY05002	Canola	cytosol	16.76	38.46
Bra028719.1-P	Field mustard	cytosol	16.76	38.46
TraesCS6A01G166700.1	Wheat	cytosol	32.96	37.46
Solyc01g014860.2.1	Tomato	nucleus	4.47	32.65
Zm00001d032312_P001	Maize	cytosol	11.73	28.38

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	ProteinID:AQK60104.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571	InterPro:IPR036612	UniProt:K7URF3
InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFAM:PF00642	PFscan:PS50084
PFscan:PS50103	PANTHER:PTHR10288	PANTHER:PTHR10288:SF5	SMART:SM00322	SMART:SM00356	SUPFAM:SSF54791
SUPFAM:SSF90229	UniParc:UPI000220E871	EnsemblPlantsGene:Zm00001d053682	EnsemblPlants:Zm00001d053682_P001	EnsemblPlants:Zm00001d053682_T001	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

C3H-transcription factor 338Zinc finger CCCH domain-containing protein 52

Coordinates

chr4:-:238942996..238945802

Molecular Weight (calculated)

37332.5 Da

IEP (calculated)

7.950

GRAVY (calculated)

-0.246

Length

358 amino acids

Sequence
(BLAST)

001: MDGSRKRVDA EDVKGDSTGG KRLRASESFQ SGVGSKVKLC TNFFSTYGCP FGEGCHFVHY FPGDYRAVSE MTNLGGATIA PPGGMMMDGP PTPIVKTRLC
101: NKYNTAEGCK WGDRCHFAHG ESELGKSMMD NYMPPPIGPP PTGYFAPPPM APPPMAPPPM APPPMAPLPM APPPMAPPPM APPPMAPPPM APLPMAPPPM
201: APPPMAPPPM APPPMAPLPM APPPMAPPPM ANPGLATPAS FGAYATAKIS VDASLAGGII GKGGANIKQI SSVTGAKVVI QEDRHESDTS LKNIEFEGTF
301: DQIRNASAMV IELIVSISGI GSNFKTKMCE NFAKGSCSYG GKCHFAHGES ELRKPAAA

Best Arabidopsis Sequence Match ( AT5G06770.5 )
(BLAST)

001: MTNLRPPVSQ VSRNMQGSGG PGGRFSGRGD PGSGPVSIFG ASTSKISVDA SLAGAIIGKG GIHSKQICRE TGAKLSIKDH ERDPNLKIIE LEGTFEQINV
101: ASGMVRELIG RLGSVKKPQG IGGPEGKPHP GSNYKTKICD RYSKGNCTYG DRCHFAHGES ELRRSGIA

Arabidopsis Description

Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.