Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d007799_P001 | |
| Zm00001d013543_P009 | |
| Zm00001d019041_P001 | |
| Zm00001d033511_P002 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 23.65 | 25.55 |
| Bra028719.1-P | Field mustard | cytosol | 23.65 | 22.44 |
| CDY05002 | Canola | cytosol | 23.65 | 22.44 |
| PGSC0003DMT400061829 | Potato | plastid | 33.11 | 21.97 |
| CDY47892 | Canola | cytosol | 32.43 | 20.87 |
| EES11610 | Sorghum | cytosol | 41.22 | 19.93 |
| Zm00001d001933_P001 | Maize | nucleus | 41.22 | 19.87 |
| Bra038697.1-P | Field mustard | cytosol, mitochondrion, nucleus | 32.43 | 19.59 |
| Bra001436.1-P | Field mustard | cytosol | 31.08 | 19.57 |
| CDY01104 | Canola | cytosol | 31.08 | 19.17 |
| CDX73836 | Canola | cytosol | 30.41 | 19.15 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 39.19 | 18.95 |
| CDY08453 | Canola | cytosol | 31.08 | 18.85 |
| Bra034776.1-P | Field mustard | cytosol | 31.08 | 18.85 |
| Solyc01g014850.2.1 | Tomato | nucleus | 31.76 | 18.8 |
| Os04t0665700-01 | Rice | nucleus | 39.19 | 18.77 |
| CDY00756 | Canola | cytosol | 29.73 | 18.64 |
| TraesCS2D01G488300.1 | Wheat | nucleus, plastid | 37.84 | 18.42 |
| AT5G06770.1 | Thale cress | cytosol | 29.73 | 18.33 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 37.84 | 18.24 |
| CDY72512 | Canola | nucleus | 24.32 | 17.39 |
| AT3G12130.1 | Thale cress | cytosol | 29.05 | 17.34 |
| VIT_13s0156g00320.t01 | Wine grape | cytosol | 34.46 | 17.23 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 34.46 | 17.17 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 34.46 | 17.06 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 34.46 | 16.78 |
| KRH67059 | Soybean | cytosol, nucleus | 33.11 | 16.61 |
| KRH71867 | Soybean | nucleus | 33.11 | 16.61 |
| KRG95373 | Soybean | cytosol | 33.11 | 16.61 |
| KRH67057 | Soybean | nucleus | 33.11 | 16.61 |
| Solyc10g080480.1.1 | Tomato | nucleus | 31.76 | 16.26 |
| Solyc10g078750.1.1 | Tomato | nucleus | 31.76 | 16.04 |
| PGSC0003DMT400060957 | Potato | cytosol | 31.76 | 15.99 |
| VIT_06s0004g01290.t01 | Wine grape | cytosol | 32.43 | 15.95 |
| KRH36330 | Soybean | nucleus | 31.76 | 15.82 |
| KRG93085 | Soybean | cytosol | 31.08 | 15.49 |
| Zm00001d036796_P004 | Maize | extracellular | 31.08 | 15.28 |
| PGSC0003DMT400029683 | Potato | cytosol | 30.41 | 14.95 |
| Solyc01g073940.2.1 | Tomato | nucleus | 28.38 | 14.53 |
| PGSC0003DMT400025445 | Potato | cytosol | 27.7 | 14.44 |
| PGSC0003DMT400016195 | Potato | cytosol | 27.7 | 14.19 |
| Zm00001d046740_P001 | Maize | plastid | 31.08 | 13.53 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 28.38 | 11.73 |
| Solyc03g063200.2.1 | Tomato | nucleus | 2.7 | 2.45 |
| Solyc01g014860.2.1 | Tomato | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d032312_P001 | EnsemblPlants:Zm00001d032312_T001 | EnsemblPlantsGene:Zm00001d032312 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR036612 | InterPro:KH_dom_type_1_sf | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF156 | ProteinID:ONM04824.1 |
| SEG:seg | SUPFAM:SSF54791 | UniParc:UPI000843DCF7 | UniProt:A0A1D6KPV2 | MapMan:15.5.16 | : |
Description
Zinc finger CCCH domain-containing protein 52
Coordinates
chr1:-:221837917..221839950
Molecular Weight (calculated)
16722.9 Da
IEP (calculated)
8.233
GRAVY (calculated)
-0.813
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQEGTPMPA VMDPQAENFD ALVTAKISMD ASLAGGIMGK GRVNTKQTSR VTCVKLSIRN HESNPKLKNI ELEGNFNQIN QTNDFARSHH DHQCKHAGEK
101: PICCRARQRE GEAAALGQEQ QLQDEVVRDL REGCLYFRRP VPLRPWRE
101: PICCRARQRE GEAAALGQEQ QLQDEVVRDL REGCLYFRRP VPLRPWRE
001: MTNLRPPVSQ VSRNMQGSGG PGGRFSGRGD PGSGPVSIFG ASTSKISVDA SLAGAIIGKG GIHSKQICRE TGAKLSIKDH ERDPNLKIIE LEGTFEQINV
101: ASGMVRELIG RLGSVKKPQG IGGPEGKPHP GSNYKTKICD RYSKGNCTYG DRCHFAHGES ELRRSGIA
101: ASGMVRELIG RLGSVKKPQG IGGPEGKPHP GSNYKTKICD RYSKGNCTYG DRCHFAHGES ELRRSGIA
Arabidopsis Description
Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.