Factsheet for Zm00001d046740_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007799_P001
Zm00001d013543_P009
Zm00001d019041_P001
Zm00001d033511_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06770.1	Zm00001d007799_P001	AT5G04280.1	21798944
AT5G06770.1	Zm00001d013543_P009	AT5G04280.1	21798944
AT5G06770.1	Zm00001d019041_P001	AT5G04280.1	21798944
AT5G06770.1	Zm00001d033511_P002	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036796_P004	Maize	extracellular	73.24	82.72
Os06t0618100-01	Rice	nucleus	60.88	79.92
KXG20371	Sorghum	cytosol	72.06	79.8
TraesCS7D01G396100.2	Wheat	cytosol	64.12	72.67
TraesCS7A01G402300.1	Wheat	cytosol	63.82	72.33
TraesCS7B01G302400.1	Wheat	cytosol	63.82	72.33
HORVU6Hr1G025870.1	Barley	cytosol	33.82	60.53
VIT_06s0004g01290.t01	Wine grape	cytosol	47.94	54.15
GSMUA_Achr7P20530_001	Banana	nucleus	47.06	53.51
GSMUA_Achr1P19650_001	Banana	nucleus	47.35	52.96
VIT_11s0016g04280.t01	Wine grape	cytosol	21.18	52.55
VIT_13s0156g00320.t01	Wine grape	cytosol	45.59	52.36
KRH36330	Soybean	nucleus	45.59	52.19
VIT_08s0007g06400.t01	Wine grape	cytosol	45.59	52.19
CDY47892	Canola	cytosol	35.29	52.17
CDY00756	Canola	cytosol	35.88	51.69
CDY01104	Canola	cytosol	36.47	51.67
KRG93085	Soybean	cytosol	45.0	51.52
Bra001436.1-P	Field mustard	cytosol	35.59	51.49
KRG95373	Soybean	cytosol	44.41	51.19
PGSC0003DMT400061829	Potato	plastid	33.53	51.12
CDX73836	Canola	cytosol	35.29	51.06
KRH67057	Soybean	nucleus	44.12	50.85
Bra034776.1-P	Field mustard	cytosol	36.47	50.82
CDY08453	Canola	cytosol	36.47	50.82
Solyc01g014850.2.1	Tomato	nucleus	37.35	50.8
KRH71867	Soybean	nucleus	43.82	50.51
KRH67059	Soybean	cytosol, nucleus	43.82	50.51
AT5G06770.1	Thale cress	cytosol	35.29	50.0
Zm00001d001933_P001	Maize	nucleus	45.0	49.84
PGSC0003DMT400060957	Potato	cytosol	42.94	49.66
PGSC0003DMT400029683	Potato	cytosol	43.82	49.5
Solyc10g078750.1.1	Tomato	nucleus	42.65	49.49
Solyc10g080480.1.1	Tomato	nucleus	42.06	49.48
AT3G12130.1	Thale cress	cytosol	35.88	49.19
Bra038697.1-P	Field mustard	cytosol, mitochondrion, nucleus	35.29	48.98
PGSC0003DMT400025445	Potato	cytosol	40.59	48.59
PGSC0003DMT400016195	Potato	cytosol	38.53	45.33
Zm00001d053682_P001	Maize	cytosol, mitochondrion, nucleus	47.06	44.69
Solyc01g073940.2.1	Tomato	nucleus	37.94	44.64
CDY05002	Canola	cytosol	18.53	40.38
Bra028719.1-P	Field mustard	cytosol	18.53	40.38
CDY72512	Canola	nucleus	24.41	40.1
Solyc03g063200.2.1	Tomato	nucleus	17.65	36.81
Zm00001d032312_P001	Maize	cytosol	13.53	31.08
Solyc01g014860.2.1	Tomato	nucleus	1.18	8.16

Protein Annotations

EntrezGene:100284355	MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	ProteinID:AQL04961.1	EMBL:BT063537
UniProt:C0P5G8	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0046872
InterPro:IPR000571	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013
PFAM:PF00642	PFscan:PS50084	PFscan:PS50103	PANTHER:PTHR10288	PANTHER:PTHR10288:SF147	SMART:SM00322
SMART:SM00356	SUPFAM:SSF54791	SUPFAM:SSF90229	UniParc:UPI0001949101	EnsemblPlantsGene:Zm00001d046740	EnsemblPlants:Zm00001d046740_P001
EnsemblPlants:Zm00001d046740_T001	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:

Description

C3H-transcription factor 318Zinc finger CCCH domain-containing protein 52

Coordinates

chr9:+:103969348..103972198

Molecular Weight (calculated)

36290.0 Da

IEP (calculated)

8.977

GRAVY (calculated)

-0.153

Length

340 amino acids

Sequence
(BLAST)

001: MYPIFIKHDL YKIGSNHLLQ SLCIHCTYIF SSHLVRLHYP AACNIISSIN IFLHVYRLIS VCRLSDIFAC SVAYIMLSIC STAGCPFGSN CHFLHNFPGG
101: YLAVSKMTNL GGPPVPAPPG RMPMGPGGPD GPPSPALKTR LCNKYNTAEG CKWGSKCHFA HGERELGKPL QMDNSMGAPP MGPGPNGHFM PPPMPIPDMV
201: PHSTFGASAT AKISVDASLA GAIIGKSGIN TKHISRVTGA KLAIRDNEAD PNHKNIELEG TFDQIKHASA MVTELIVRIS GKVPPQAKNN PGRGPGSHAG
301: GPASNFKTKL CENFNKGSCT FGDRCHFAHG ESELRKPAAA

Best Arabidopsis Sequence Match ( AT3G12130.1 )
(BLAST)

001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.