Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 3
- endoplasmic reticulum 1
- mitochondrion 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra005798.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06770.1 | Bra005798.1-P | AT5G04280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05002 | Canola | cytosol | 100.0 | 100.0 |
| Bra001436.1-P | Field mustard | cytosol | 47.44 | 31.49 |
| AT5G06770.1 | Thale cress | cytosol | 48.08 | 31.25 |
| Bra038697.1-P | Field mustard | cytosol, mitochondrion, nucleus | 48.08 | 30.61 |
| Bra034776.1-P | Field mustard | cytosol | 47.44 | 30.33 |
| PGSC0003DMT400025445 | Potato | cytosol | 46.79 | 25.7 |
| Solyc10g080480.1.1 | Tomato | nucleus | 45.51 | 24.57 |
| KRH67057 | Soybean | nucleus | 46.15 | 24.41 |
| Os06t0618100-01 | Rice | nucleus | 40.38 | 24.32 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 46.15 | 24.24 |
| PGSC0003DMT400060957 | Potato | cytosol | 45.51 | 24.15 |
| KRG95373 | Soybean | cytosol | 45.51 | 24.07 |
| KRH67059 | Soybean | cytosol, nucleus | 44.87 | 23.73 |
| Zm00001d032312_P001 | Maize | cytosol | 22.44 | 23.65 |
| Os04t0665700-01 | Rice | nucleus | 46.79 | 23.62 |
| TraesCS6B01G194300.1 | Wheat | cytosol | 44.87 | 23.57 |
| TraesCS6D01G155200.1 | Wheat | cytosol | 31.41 | 23.45 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 44.87 | 23.41 |
| KRH71867 | Soybean | nucleus | 44.23 | 23.39 |
| Solyc10g078750.1.1 | Tomato | nucleus | 43.59 | 23.21 |
| Zm00001d001933_P001 | Maize | nucleus | 45.51 | 23.13 |
| PGSC0003DMT400029683 | Potato | cytosol | 44.23 | 22.92 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 44.23 | 22.7 |
| TraesCS6A01G166900.1 | Wheat | cytosol | 44.23 | 22.7 |
| TraesCS6D01G155400.1 | Wheat | cytosol | 43.59 | 22.37 |
| Os02t0194200-01 | Rice | nucleus | 42.95 | 22.33 |
| EES11610 | Sorghum | cytosol | 43.59 | 22.22 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 19.23 | 21.9 |
| TraesCS2D01G488300.1 | Wheat | nucleus, plastid | 42.31 | 21.71 |
| Zm00001d036796_P004 | Maize | extracellular | 41.67 | 21.59 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 42.31 | 21.57 |
| KXG20371 | Sorghum | cytosol | 42.31 | 21.5 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 42.31 | 21.5 |
| EES04688 | Sorghum | nucleus | 40.38 | 21.36 |
| TraesCS7A01G402300.1 | Wheat | cytosol | 39.74 | 20.67 |
| TraesCS7D01G396100.2 | Wheat | cytosol | 39.74 | 20.67 |
| TraesCS7B01G302400.1 | Wheat | cytosol | 39.74 | 20.67 |
| HORVU6Hr1G025870.1 | Barley | cytosol | 24.36 | 20.0 |
| TraesCS6D01G155300.1 | Wheat | mitochondrion | 37.18 | 18.95 |
| HORVU6Hr1G033840.5 | Barley | mitochondrion | 41.03 | 18.77 |
| Zm00001d046740_P001 | Maize | plastid | 40.38 | 18.53 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 38.46 | 16.76 |
| TraesCS6B01G194200.1 | Wheat | cytosol, mitochondrion, plastid | 19.87 | 15.9 |
| TraesCS6A01G166700.1 | Wheat | cytosol | 31.41 | 15.56 |
| TraesCS6A01G166800.1 | Wheat | cytosol | 20.51 | 10.32 |
| Solyc03g063200.2.1 | Tomato | nucleus | 9.62 | 9.2 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | EnsemblPlantsGene:Bra028719 | EnsemblPlants:Bra028719.1 | EnsemblPlants:Bra028719.1-P |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0046872 | GO:GO:1900057 | InterPro:IPR000571 | InterPro:IPR036612 | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf |
| UniProt:M4EIV4 | PFAM:PF00013 | PFAM:PF00642 | PFscan:PS50084 | PFscan:PS50103 | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF5 | SMART:SM00356 | SUPFAM:SSF54791 | SUPFAM:SSF90229 | TMHMM:TMhelix | UniParc:UPI000254318E |
| InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg | : | : | : |
Description
AT5G06770 (E=5e-016) | KH domain-containing protein / zinc finger (CCCH type) family protein
Coordinates
chrA02:-:2388898..2389449
Molecular Weight (calculated)
17256.6 Da
IEP (calculated)
9.289
GRAVY (calculated)
-0.573
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTHKRGHSD TVSSSNSNVG FKRPKQGKPF HSPLQQLILL LALLIASVAA KIIVTTIIGK DGNRTKQICR ETGVKLPIVD HERGPNLKNV EIDGNYDQIN
101: EANGRMRELI RRFGSDPANS APRSSYKSEL CEKFAAGECN YGDRCHFAHG VAELRD
101: EANGRMRELI RRFGSDPANS APRSSYKSEL CEKFAAGECN YGDRCHFAHG VAELRD
001: MTNLRPPVSQ VSRNMQGSGG PGGRFSGRGD PGSGPVSIFG ASTSKISVDA SLAGAIIGKG GIHSKQICRE TGAKLSIKDH ERDPNLKIIE LEGTFEQINV
101: ASGMVRELIG RLGSVKKPQG IGGPEGKPHP GSNYKTKICD RYSKGNCTYG DRCHFAHGES ELRRSGIA
101: ASGMVRELIG RLGSVKKPQG IGGPEGKPHP GSNYKTKICD RYSKGNCTYG DRCHFAHGES ELRRSGIA
Arabidopsis Description
Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.