Factsheet for Os06t0618100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0681900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06770.1	Os03t0681900-01	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036796_P004	Maize	extracellular	81.85	70.43
KXG20371	Sorghum	cytosol	81.85	69.06
TraesCS7D01G396100.2	Wheat	cytosol	78.76	68.0
TraesCS7B01G302400.1	Wheat	cytosol	78.38	67.67
TraesCS7A01G402300.1	Wheat	cytosol	78.38	67.67
Os02t0194200-01	Rice	nucleus	74.9	64.67
Zm00001d046740_P001	Maize	plastid	79.92	60.88
HORVU6Hr1G025870.1	Barley	cytosol	42.08	57.37
Os04t0665700-01	Rice	nucleus	63.32	53.07
PGSC0003DMT400061829	Potato	plastid	44.4	51.57
Solyc01g014850.2.1	Tomato	nucleus	49.42	51.2
GSMUA_Achr7P20530_001	Banana	nucleus	59.07	51.17
VIT_11s0016g04280.t01	Wine grape	cytosol	27.03	51.09
VIT_08s0007g06400.t01	Wine grape	cytosol	58.3	50.84
VIT_06s0004g01290.t01	Wine grape	cytosol	59.07	50.83
KRG95373	Soybean	cytosol	56.76	49.83
KRH67057	Soybean	nucleus	56.76	49.83
KRH67059	Soybean	cytosol, nucleus	56.76	49.83
Bra001436.1-P	Field mustard	cytosol	45.17	49.79
GSMUA_Achr1P19650_001	Banana	nucleus	58.3	49.67
CDY47892	Canola	cytosol	44.02	49.57
VIT_13s0156g00320.t01	Wine grape	cytosol	56.37	49.32
CDY01104	Canola	cytosol	45.56	49.17
KRH71867	Soybean	nucleus	55.98	49.15
CDX73836	Canola	cytosol	44.02	48.51
CDY08453	Canola	cytosol	45.56	48.36
Bra034776.1-P	Field mustard	cytosol	45.56	48.36
CDY00756	Canola	cytosol	44.02	48.31
KRH36330	Soybean	nucleus	54.83	47.81
Solyc10g078750.1.1	Tomato	nucleus	54.05	47.78
PGSC0003DMT400060957	Potato	cytosol	53.67	47.28
KRG93085	Soybean	cytosol	54.05	47.14
AT5G06770.1	Thale cress	cytosol	43.63	47.08
Bra038697.1-P	Field mustard	cytosol, mitochondrion, nucleus	44.4	46.94
Solyc10g080480.1.1	Tomato	nucleus	52.12	46.71
PGSC0003DMT400029683	Potato	cytosol	54.05	46.51
PGSC0003DMT400025445	Potato	cytosol	50.58	46.13
AT3G12130.1	Thale cress	cytosol	43.24	45.16
PGSC0003DMT400016195	Potato	cytosol	47.88	42.91
Solyc01g073940.2.1	Tomato	nucleus	46.72	41.87
Bra028719.1-P	Field mustard	cytosol	24.32	40.38
CDY05002	Canola	cytosol	24.32	40.38
CDY72512	Canola	nucleus	29.73	37.2
Solyc03g063200.2.1	Tomato	nucleus	20.46	32.52
Solyc01g014860.2.1	Tomato	nucleus	0.39	2.04

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	UniProt:A0A0P0WZ20	ProteinID:BAS98638.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlantsGene:Os06g0618100	EnsemblPlants:Os06t0618100-01
PFAM:PF00013	PFAM:PF00642	PFscan:PS50084	PFscan:PS50103	PANTHER:PTHR10288	PANTHER:PTHR10288:SF147
SMART:SM00322	SMART:SM00356	SUPFAM:SSF54791	SUPFAM:SSF90229	UniParc:UPI0000E128AB	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44K Homology, type 1, subgroup domain containing protein. (Os06t0618100-01)

Coordinates

chr6:-:24808827..24811960

Molecular Weight (calculated)

26945.2 Da

IEP (calculated)

9.216

GRAVY (calculated)

-0.397

Length

259 amino acids

Sequence
(BLAST)

001: MMFSLCSTSG CPFGSSCHFL HNFPGGYQAA AKMTSHGGTA VAAPPGRMPL GPGAPNGPPT SSVKTRMCNK YNTAEGCKWG SKCHFAHGER ELGKPMLLDN
101: SMPHPMGSMP FEAPPMPGPD IVPPSTFGAS ATAKISVDAS LAGGIIGKGG TNTKHISRMT GAKLAIRDNE SNPNLKNIEL EGTFDQIKHA SAMVTELIVR
201: ISGNAPPAKN PGRGSHAGGP GSNFKTKLCE NFNKGSCTFG DRCHFAHGES ELRKPPAAA

Best Arabidopsis Sequence Match ( AT3G12130.1 )
(BLAST)

001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.