CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90774
KRH35987

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06770.1	KRG90774	AT5G04280.1	21798944
AT5G06770.1	KRH35987	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67059	Soybean	cytosol, nucleus	84.75	84.75
KRG95373	Soybean	cytosol	84.41	84.41
KRH67057	Soybean	nucleus	83.73	83.73
VIT_08s0007g06400.t01	Wine grape	cytosol	72.88	72.39
VIT_11s0016g04280.t01	Wine grape	cytosol	32.54	70.07
Solyc10g078750.1.1	Tomato	nucleus	64.75	65.19
Solyc10g080480.1.1	Tomato	nucleus	63.73	65.05
PGSC0003DMT400060957	Potato	cytosol	64.41	64.63
PGSC0003DMT400025445	Potato	cytosol	62.03	64.44
PGSC0003DMT400029683	Potato	cytosol	65.42	64.12
KRG93085	Soybean	cytosol	64.07	63.64
KRH36330	Soybean	nucleus	62.71	62.29
CDY47892	Canola	cytosol	48.47	62.17
CDX73836	Canola	cytosol	49.15	61.7
Bra001436.1-P	Field mustard	cytosol	49.15	61.7
GSMUA_Achr7P20530_001	Banana	nucleus	61.69	60.87
CDY01104	Canola	cytosol	49.49	60.83
CDY00756	Canola	cytosol	48.47	60.59
CDY08453	Canola	cytosol	49.83	60.25
Bra034776.1-P	Field mustard	cytosol	49.83	60.25
AT3G12130.1	Thale cress	cytosol	50.17	59.68
GSMUA_Achr1P19650_001	Banana	nucleus	60.68	58.88
AT5G06770.1	Thale cress	cytosol	47.46	58.33
Os02t0194200-01	Rice	nucleus	59.32	58.33
Solyc03g063200.2.1	Tomato	nucleus	31.53	57.06
Os04t0665700-01	Rice	nucleus	59.66	56.96
EES04688	Sorghum	nucleus	56.95	56.95
Zm00001d036796_P004	Maize	extracellular	57.29	56.15
Os06t0618100-01	Rice	nucleus	49.15	55.98
Zm00001d001933_P001	Maize	nucleus	57.97	55.7
TraesCS2D01G488300.1	Wheat	nucleus, plastid	57.29	55.59
TraesCS6B01G194300.1	Wheat	cytosol	55.93	55.56
EES11610	Sorghum	cytosol	57.29	55.23
Bra038697.1-P	Field mustard	cytosol, mitochondrion, nucleus	45.76	55.1
TraesCS2B01G515600.1	Wheat	nucleus, plastid	57.29	55.05
TraesCS7D01G396100.2	Wheat	cytosol	55.93	55.0
TraesCS7B01G302400.1	Wheat	cytosol	55.93	55.0
TraesCS6A01G166900.1	Wheat	cytosol	56.61	54.93
TraesCS7A01G402300.1	Wheat	cytosol	55.59	54.67
TraesCS2A01G488000.1	Wheat	nucleus, plastid	56.61	54.58
KXG20371	Sorghum	cytosol	56.61	54.4
TraesCS6D01G155400.1	Wheat	cytosol	55.59	53.95
CDY72512	Canola	nucleus	34.58	49.28
HORVU6Hr1G033840.5	Barley	mitochondrion	55.93	48.39
TraesCS6D01G155300.1	Wheat	mitochondrion	49.15	47.39
Bra028719.1-P	Field mustard	cytosol	23.39	44.23
CDY05002	Canola	cytosol	23.39	44.23
Zm00001d046740_P001	Maize	plastid	50.51	43.82
TraesCS6D01G155200.1	Wheat	cytosol	30.51	43.06
Zm00001d053682_P001	Maize	cytosol, mitochondrion, nucleus	52.2	43.02
HORVU6Hr1G025870.1	Barley	cytosol	26.1	40.53
TraesCS6B01G194200.1	Wheat	cytosol, mitochondrion, plastid	26.78	40.51
TraesCS6A01G166800.1	Wheat	cytosol	38.31	36.45
TraesCS6A01G166700.1	Wheat	cytosol	35.59	33.33
Zm00001d032312_P001	Maize	cytosol	16.61	33.11

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	EMBL:ACUP02001095	EnsemblPlantsGene:GLYMA_02G173900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	UniProt:I1JG21	InterPro:IPR000571
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRH71867	ProteinID:KRH71867
ProteinID:KRH71867.1	PFAM:PF00013	PFAM:PF00642	PFAM:PF14608	PFscan:PS50084	PFscan:PS50103
PANTHER:PTHR10288	PANTHER:PTHR10288:SF5	SMART:SM00322	SMART:SM00356	SUPFAM:SSF54791	SUPFAM:SSF90229
UniParc:UPI0002337144	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:27701765..27706702

Molecular Weight (calculated)

31061.3 Da

IEP (calculated)

9.750

GRAVY (calculated)

-0.385

Length

295 amino acids

Sequence
(BLAST)

001: MDVRKRGRPD VNLNGAVKKT KQELESLSSG VGSKSKPCTK FFSTAGCPFG EGCHFLHYVP GGYNVVAHMM NLKPAAPPPR TVAAPPPIPN GSAPSAVKTR
101: ICNKFNTAEG CKFGDKCHFA HGEWELGKPI APSIDDHHHH RPLGPPAGGR MAGRIEPPPA MAGSFGAIST AKISVEASLA GAIIGKGGVN SKQICRQTGA
201: KLSIREHESD PNLRNIELEG TFEQIKEASN MVKDLLLTVS MSAPPKSTPG VPGAPAPPGS NFKTKLCENF AKGSCTFGER CHFAHGAAEL RKSGV

Best Arabidopsis Sequence Match ( AT3G12130.1 )
(BLAST)

001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.