Factsheet for Os04t0665700-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0681900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06770.1	Os03t0681900-01	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11610	Sorghum	cytosol	80.58	81.37
Zm00001d001933_P001	Maize	nucleus	78.32	78.83
TraesCS2A01G488000.1	Wheat	nucleus, plastid	77.02	77.78
TraesCS2D01G488300.1	Wheat	nucleus, plastid	76.38	77.63
TraesCS2B01G515600.1	Wheat	nucleus, plastid	76.05	76.55
Os02t0194200-01	Rice	nucleus	62.78	64.67
Os06t0618100-01	Rice	nucleus	53.07	63.32
GSMUA_Achr1P19650_001	Banana	nucleus	62.14	63.16
GSMUA_Achr7P20530_001	Banana	nucleus	59.22	61.2
VIT_13s0156g00320.t01	Wine grape	cytosol	57.93	60.47
KRH67057	Soybean	nucleus	57.28	60.0
KRH71867	Soybean	nucleus	56.96	59.66
KRH67059	Soybean	cytosol, nucleus	56.63	59.32
VIT_06s0004g01290.t01	Wine grape	cytosol	57.28	58.8
CDY47892	Canola	cytosol	43.69	58.7
KRG95373	Soybean	cytosol	55.99	58.64
CDY01104	Canola	cytosol	44.98	57.92
KRG93085	Soybean	cytosol	55.66	57.91
KRH36330	Soybean	nucleus	55.34	57.58
VIT_08s0007g06400.t01	Wine grape	cytosol	55.02	57.24
AT5G06770.1	Thale cress	cytosol	44.34	57.08
Bra001436.1-P	Field mustard	cytosol	43.37	57.02
CDX73836	Canola	cytosol	43.37	57.02
CDY00756	Canola	cytosol	43.37	56.78
Solyc10g078750.1.1	Tomato	nucleus	53.72	56.66
CDY08453	Canola	cytosol	44.66	56.56
Bra034776.1-P	Field mustard	cytosol	44.66	56.56
PGSC0003DMT400029683	Potato	cytosol	55.02	56.48
Solyc01g014850.2.1	Tomato	nucleus	45.63	56.4
VIT_11s0016g04280.t01	Wine grape	cytosol	24.92	56.2
PGSC0003DMT400061829	Potato	plastid	40.45	56.05
PGSC0003DMT400025445	Potato	cytosol	51.46	55.99
AT3G12130.1	Thale cress	cytosol	44.01	54.84
PGSC0003DMT400060957	Potato	cytosol	51.78	54.42
Solyc10g080480.1.1	Tomato	nucleus	50.81	54.33
Bra038697.1-P	Field mustard	cytosol, mitochondrion, nucleus	41.1	51.84
PGSC0003DMT400016195	Potato	cytosol	47.57	50.87
Solyc01g073940.2.1	Tomato	nucleus	47.25	50.52
CDY72512	Canola	nucleus	33.33	49.76
Solyc01g014860.2.1	Tomato	nucleus	7.44	46.94
Bra028719.1-P	Field mustard	cytosol	23.62	46.79
CDY05002	Canola	cytosol	23.62	46.79
Solyc03g063200.2.1	Tomato	nucleus	22.98	43.56
Zm00001d032312_P001	Maize	cytosol	18.77	39.19

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	EntrezGene:4337319	EMBL:AK121951	ProteinID:BAF16093.1
ProteinID:BAS91505.1	ProteinID:CAE03586.1	ProteinID:EEE61859.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlantsGene:Os04g0665700	EnsemblPlants:Os04t0665700-01	PFAM:PF00013	PFAM:PF00642
PFAM:PF14608	PFscan:PS50084	PFscan:PS50103	PANTHER:PTHR10288	PANTHER:PTHR10288:SF156	UniProt:Q7XPK1
SMART:SM00322	SMART:SM00356	SUPFAM:SSF54791	SUPFAM:SSF90229	UniParc:UPI00001B1780	RefSeq:XP_015636567.1
InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:	:

Description

ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 31K Homology, type 1, subgroup domain containing protein. (Os04t0665700-01)

Coordinates

chr4:+:33982975..33986219

Molecular Weight (calculated)

31789.6 Da

IEP (calculated)

9.888

GRAVY (calculated)

-0.544

Length

309 amino acids

Sequence
(BLAST)

001: MEGAGAARKR SRPDTANGGA AGGKRSRETE SFQTGLSSKL KPCTKFFSTI GCPFGEGCHF SHFVPGGYQA VAKTLNLGNP AVPAPARAPM DHAAGGNSHP
101: ASSGKTRMCT KYNTAEGCKF GDKCHFAHGE RELGKPAYMS HESAMAPPMG GRYGGRPEPP PPAAMGPPAG NFGASATAKI SVDASLAGGI IGKGGVNTKQ
201: ICRVTGVKLS IRDHESDSNL KNIELEGNFD QIKQASNMVG ELIATISPST PAKKPAGSAA GAAPAGRGGP GGRSNYKTKL CENFVKGTCT FGDRCHFAHG
301: ENEQRKGAA

Best Arabidopsis Sequence Match ( AT3G12130.1 )
(BLAST)

001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.