Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47892 | Canola | cytosol | 86.12 | 91.74 |
| Bra034776.1-P | Field mustard | cytosol | 80.0 | 80.33 |
| Bra001436.1-P | Field mustard | cytosol | 74.69 | 77.87 |
| AT3G12130.1 | Thale cress | cytosol | 75.92 | 75.0 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 60.82 | 50.17 |
| KRG95373 | Soybean | cytosol | 58.78 | 48.81 |
| Bra028719.1-P | Field mustard | cytosol | 30.61 | 48.08 |
| KRH67059 | Soybean | cytosol, nucleus | 57.14 | 47.46 |
| KRH67057 | Soybean | nucleus | 57.14 | 47.46 |
| Solyc10g078750.1.1 | Tomato | nucleus | 55.92 | 46.76 |
| Solyc10g080480.1.1 | Tomato | nucleus | 55.1 | 46.71 |
| PGSC0003DMT400060957 | Potato | cytosol | 55.51 | 46.26 |
| PGSC0003DMT400029683 | Potato | cytosol | 56.73 | 46.18 |
| PGSC0003DMT400025445 | Potato | cytosol | 53.47 | 46.13 |
| KRH71867 | Soybean | nucleus | 55.1 | 45.76 |
| Os02t0194200-01 | Rice | nucleus | 54.69 | 44.67 |
| Os06t0618100-01 | Rice | nucleus | 46.94 | 44.4 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 24.49 | 43.8 |
| Zm00001d036796_P004 | Maize | extracellular | 53.47 | 43.52 |
| KXG20371 | Sorghum | cytosol | 53.88 | 43.0 |
| TraesCS6B01G194300.1 | Wheat | cytosol | 51.84 | 42.76 |
| TraesCS7D01G396100.2 | Wheat | cytosol | 52.24 | 42.67 |
| TraesCS7B01G302400.1 | Wheat | cytosol | 52.24 | 42.67 |
| TraesCS7A01G402300.1 | Wheat | cytosol | 52.24 | 42.67 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 51.84 | 42.47 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 52.24 | 42.11 |
| EES04688 | Sorghum | nucleus | 50.61 | 42.03 |
| TraesCS6D01G155400.1 | Wheat | cytosol | 51.84 | 41.78 |
| EES11610 | Sorghum | cytosol | 51.43 | 41.18 |
| TraesCS6A01G166900.1 | Wheat | cytosol | 51.02 | 41.12 |
| Os04t0665700-01 | Rice | nucleus | 51.84 | 41.1 |
| Zm00001d001933_P001 | Maize | nucleus | 51.43 | 41.04 |
| TraesCS6D01G155200.1 | Wheat | cytosol | 34.69 | 40.67 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 49.8 | 39.74 |
| HORVU6Hr1G025870.1 | Barley | cytosol | 30.2 | 38.95 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 48.57 | 38.89 |
| TraesCS2D01G488300.1 | Wheat | nucleus, plastid | 48.16 | 38.82 |
| TraesCS6D01G155300.1 | Wheat | mitochondrion | 46.94 | 37.58 |
| HORVU6Hr1G033840.5 | Barley | mitochondrion | 51.02 | 36.66 |
| Zm00001d046740_P001 | Maize | plastid | 48.98 | 35.29 |
| Zm00001d032312_P001 | Maize | cytosol | 19.59 | 32.43 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 46.53 | 31.84 |
| TraesCS6A01G166700.1 | Wheat | cytosol | 37.96 | 29.52 |
| Solyc03g063200.2.1 | Tomato | nucleus | 18.78 | 28.22 |
| TraesCS6B01G194200.1 | Wheat | cytosol, mitochondrion, plastid | 21.63 | 27.18 |
| TraesCS6A01G166800.1 | Wheat | cytosol | 29.39 | 23.23 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | EnsemblPlantsGene:Bra038697 | EnsemblPlants:Bra038697.1 | EnsemblPlants:Bra038697.1-P |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 |
| InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | UniProt:M4FC81 | PFAM:PF00013 |
| PFAM:PF00642 | PFscan:PS50084 | PFscan:PS50103 | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF5 | SMART:SM00322 |
| SMART:SM00356 | SUPFAM:SSF54791 | SUPFAM:SSF90229 | UniParc:UPI0002545416 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf |
| SEG:seg | : | : | : | : | : |
Description
AT3G12130 (E=1e-078) | KH domain-containing protein / zinc finger (CCCH type) family protein
Coordinates
chrA01:+:26532229..26534102
Molecular Weight (calculated)
25207.7 Da
IEP (calculated)
10.012
GRAVY (calculated)
-0.426
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTRKRAGSF NSNGGGGGFK KSKQGVSDVV FVTWSYIVST SGCPFGDNCH FLHYVPGGYN AVAQLTNMAL PMPQASRNMQ GPGGGGGGRF SGRGGESGPG
101: HVSSFGASAT AKISVDASLA GAIIGKGGVS SKQICRQTGA KLSIQDHERD PNLKNIELEG TFEQINEASV MVRELIGRLN SAASRRPPGG GGGGIGGGVG
201: SEGKPHPGSN FKTKMCERFA KGNCTFGDRC HFAHGEAELR RSGVA
101: HVSSFGASAT AKISVDASLA GAIIGKGGVS SKQICRQTGA KLSIQDHERD PNLKNIELEG TFEQINEASV MVRELIGRLN SAASRRPPGG GGGGIGGGVG
201: SEGKPHPGSN FKTKMCERFA KGNCTFGDRC HFAHGEAELR RSGVA
001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.