Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01104 | Canola | cytosol | 83.87 | 86.67 |
| Bra034776.1-P | Field mustard | cytosol | 85.08 | 86.48 |
| CDY08453 | Canola | cytosol | 85.08 | 86.48 |
| CDY00756 | Canola | cytosol | 79.84 | 83.9 |
| CDX73836 | Canola | cytosol | 79.44 | 83.83 |
| CDY47892 | Canola | cytosol | 76.61 | 82.61 |
| Bra001436.1-P | Field mustard | cytosol | 78.23 | 82.55 |
| Bra038697.1-P | Field mustard | cytosol, mitochondrion, nucleus | 75.0 | 75.92 |
| AT5G06770.1 | Thale cress | cytosol | 69.76 | 72.08 |
| KRG95373 | Soybean | cytosol | 64.92 | 54.58 |
| KRH67059 | Soybean | cytosol, nucleus | 63.31 | 53.22 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 63.71 | 53.2 |
| KRH67057 | Soybean | nucleus | 62.9 | 52.88 |
| Solyc10g078750.1.1 | Tomato | nucleus | 59.68 | 50.51 |
| PGSC0003DMT400060957 | Potato | cytosol | 59.68 | 50.34 |
| Solyc10g080480.1.1 | Tomato | nucleus | 58.47 | 50.17 |
| KRH71867 | Soybean | nucleus | 59.68 | 50.17 |
| PGSC0003DMT400025445 | Potato | cytosol | 56.85 | 49.65 |
| PGSC0003DMT400029683 | Potato | cytosol | 59.68 | 49.17 |
| Os02t0194200-01 | Rice | nucleus | 56.45 | 46.67 |
| Zm00001d036796_P004 | Maize | extracellular | 55.65 | 45.85 |
| KXG20371 | Sorghum | cytosol | 56.45 | 45.6 |
| TraesCS6B01G194300.1 | Wheat | cytosol | 54.44 | 45.45 |
| TraesCS7D01G396100.2 | Wheat | cytosol | 54.44 | 45.0 |
| TraesCS7A01G402300.1 | Wheat | cytosol | 54.44 | 45.0 |
| TraesCS7B01G302400.1 | Wheat | cytosol | 54.44 | 45.0 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 54.03 | 44.82 |
| EES11610 | Sorghum | cytosol | 55.24 | 44.77 |
| TraesCS6A01G166900.1 | Wheat | cytosol | 54.44 | 44.41 |
| TraesCS6D01G155400.1 | Wheat | cytosol | 54.44 | 44.41 |
| Zm00001d001933_P001 | Maize | nucleus | 54.84 | 44.3 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 54.03 | 44.08 |
| Os04t0665700-01 | Rice | nucleus | 54.84 | 44.01 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 54.03 | 43.79 |
| EES04688 | Sorghum | nucleus | 52.02 | 43.73 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 54.03 | 43.65 |
| Os06t0618100-01 | Rice | nucleus | 45.16 | 43.24 |
| TraesCS2D01G488300.1 | Wheat | nucleus, plastid | 52.82 | 43.09 |
| TraesCS6D01G155200.1 | Wheat | cytosol | 33.06 | 39.23 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 20.97 | 37.96 |
| HORVU6Hr1G033840.5 | Barley | mitochondrion | 52.02 | 37.83 |
| TraesCS6D01G155300.1 | Wheat | mitochondrion | 45.56 | 36.93 |
| Solyc03g063200.2.1 | Tomato | nucleus | 24.19 | 36.81 |
| Zm00001d046740_P001 | Maize | plastid | 49.19 | 35.88 |
| HORVU6Hr1G025870.1 | Barley | cytosol | 27.42 | 35.79 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 46.37 | 32.12 |
| TraesCS6A01G166700.1 | Wheat | cytosol | 39.92 | 31.43 |
| Zm00001d032312_P001 | Maize | cytosol | 17.34 | 29.05 |
| TraesCS6A01G166800.1 | Wheat | cytosol | 32.26 | 25.81 |
| TraesCS6B01G194200.1 | Wheat | cytosol, mitochondrion, plastid | 19.35 | 24.62 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | EntrezGene:820388 | UniProt:A0A178V6T0 | ProteinID:AAG51040.1 |
| ProteinID:AEE75154.1 | EMBL:AK227373 | ArrayExpress:AT3G12130 | EnsemblPlantsGene:AT3G12130 | RefSeq:AT3G12130 | TAIR:AT3G12130 |
| RefSeq:AT3G12130-TAIR-G | EnsemblPlants:AT3G12130.1 | TAIR:AT3G12130.1 | EMBL:AY085746 | ProteinID:BAB01961.1 | EMBL:BT025032 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046872 |
| GO:GO:1900057 | InterPro:IPR000571 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf |
| RefSeq:NP_566412.1 | ProteinID:OAP01586.1 | PFAM:PF00013 | PFAM:PF00642 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50084 | PFscan:PS50103 |
| PANTHER:PTHR10288 | PANTHER:PTHR10288:SF5 | UniProt:Q9C7C3 | SMART:SM00322 | SMART:SM00356 | SUPFAM:SSF54791 |
| SUPFAM:SSF90229 | UniParc:UPI00000A55AD | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg | : |
Description
Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
Coordinates
chr3:-:3864071..3866681
Molecular Weight (calculated)
25953.6 Da
IEP (calculated)
9.981
GRAVY (calculated)
-0.623
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.