Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73836 | Canola | cytosol | 94.92 | 95.32 |
| Bra001436.1-P | Field mustard | cytosol | 90.68 | 91.06 |
| CDY01104 | Canola | cytosol | 87.29 | 85.83 |
| CDY08453 | Canola | cytosol | 87.29 | 84.43 |
| CDY47892 | Canola | cytosol | 81.36 | 83.48 |
| AT3G12130.1 | Thale cress | cytosol | 83.9 | 79.84 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 66.95 | 53.2 |
| KRG95373 | Soybean | cytosol | 64.83 | 51.86 |
| CDY72512 | Canola | nucleus | 45.34 | 51.69 |
| KRH67059 | Soybean | cytosol, nucleus | 63.14 | 50.51 |
| KRH67057 | Soybean | nucleus | 62.71 | 50.17 |
| PGSC0003DMT400025445 | Potato | cytosol | 59.75 | 49.65 |
| PGSC0003DMT400060957 | Potato | cytosol | 61.02 | 48.98 |
| Solyc10g080480.1.1 | Tomato | nucleus | 59.75 | 48.79 |
| KRH71867 | Soybean | nucleus | 60.59 | 48.47 |
| Solyc10g078750.1.1 | Tomato | nucleus | 60.17 | 48.46 |
| PGSC0003DMT400029683 | Potato | cytosol | 60.59 | 47.51 |
| CDY05002 | Canola | cytosol | 30.93 | 46.79 |
| Os02t0194200-01 | Rice | nucleus | 58.9 | 46.33 |
| Zm00001d036796_P004 | Maize | extracellular | 57.63 | 45.18 |
| TraesCS6B01G194300.1 | Wheat | cytosol | 56.36 | 44.78 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 57.63 | 44.74 |
| TraesCS7A01G402300.1 | Wheat | cytosol | 56.78 | 44.67 |
| TraesCS7B01G302400.1 | Wheat | cytosol | 56.78 | 44.67 |
| TraesCS7D01G396100.2 | Wheat | cytosol | 56.78 | 44.67 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 56.36 | 44.48 |
| EES11610 | Sorghum | cytosol | 57.63 | 44.44 |
| Zm00001d001933_P001 | Maize | nucleus | 57.63 | 44.3 |
| KXG20371 | Sorghum | cytosol | 57.63 | 44.3 |
| Os06t0618100-01 | Rice | nucleus | 48.31 | 44.02 |
| TraesCS6D01G155400.1 | Wheat | cytosol | 56.36 | 43.75 |
| TraesCS6A01G166900.1 | Wheat | cytosol | 55.93 | 43.42 |
| EES04688 | Sorghum | nucleus | 54.24 | 43.39 |
| Os04t0665700-01 | Rice | nucleus | 56.78 | 43.37 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 54.66 | 42.02 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 54.24 | 41.83 |
| TraesCS2D01G488300.1 | Wheat | nucleus, plastid | 53.81 | 41.78 |
| TraesCS6D01G155200.1 | Wheat | cytosol | 36.44 | 41.15 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 23.31 | 40.15 |
| HORVU6Hr1G025870.1 | Barley | cytosol | 30.93 | 38.42 |
| HORVU6Hr1G033840.5 | Barley | mitochondrion | 54.66 | 37.83 |
| TraesCS6D01G155300.1 | Wheat | mitochondrion | 47.88 | 36.93 |
| Zm00001d046740_P001 | Maize | plastid | 51.69 | 35.88 |
| Solyc03g063200.2.1 | Tomato | nucleus | 24.58 | 35.58 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 48.73 | 32.12 |
| TraesCS6A01G166700.1 | Wheat | cytosol | 42.37 | 31.75 |
| Zm00001d032312_P001 | Maize | cytosol | 18.64 | 29.73 |
| TraesCS6A01G166800.1 | Wheat | cytosol | 34.32 | 26.13 |
| TraesCS6B01G194200.1 | Wheat | cytosol, mitochondrion, plastid | 20.76 | 25.13 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | GO:A0A078EI25 | EnsemblPlants:CDY00756 | ProteinID:CDY00756 |
| ProteinID:CDY00756.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0046872 |
| EnsemblPlantsGene:GSBRNA2T00110634001 | InterPro:IPR000571 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf |
| PFAM:PF00013 | PFAM:PF00642 | PFscan:PS50084 | PFscan:PS50103 | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF5 |
| SMART:SM00322 | SMART:SM00356 | SUPFAM:SSF54791 | SUPFAM:SSF90229 | UniParc:UPI0004EDD4D5 | InterPro:Znf_CCCH |
| InterPro:Znf_CCCH_sf | SEG:seg | : | : | : | : |
Description
BnaC03g37400D
Coordinates
chrLK031921:-:1001855..1003599
Molecular Weight (calculated)
24918.4 Da
IEP (calculated)
10.030
GRAVY (calculated)
-0.614
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTLKRGRPE ANSNGAGFKK SKQEMESTGL GSKSKPCTKY FSTSGCPFGE NCHFSHYVPG GYNAVAQLTN MAPPMPQVSR NMQGRFSGRG DSGPGHVSSF
101: GASATAKISV DASLAGAIIG KGGVSSKQIY RQTGAKLTIQ DHERDPNLKN IELEGTFELI NEASVMVREL IGRLNSAARR PPGGGGGGVG SEGKPHPGSN
201: FKTKMCERFS KGSCTFGDRC HFAHGEAELR RSGISS
101: GASATAKISV DASLAGAIIG KGGVSSKQIY RQTGAKLTIQ DHERDPNLKN IELEGTFELI NEASVMVREL IGRLNSAARR PPGGGGGGVG SEGKPHPGSN
201: FKTKMCERFS KGSCTFGDRC HFAHGEAELR RSGISS
001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.