Factsheet for GSMUA_Achr7P20530_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P12550_001
GSMUA_Achr4P22370_001
GSMUA_Achr4P28550_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06770.1	GSMUA_Achr2P12550_001	AT5G04280.1	21798944
AT5G06770.1	GSMUA_Achr4P22370_001	AT5G04280.1	21798944
AT5G06770.1	GSMUA_Achr4P28550_001	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g01290.t01	Wine grape	cytosol	66.89	66.45
VIT_13s0156g00320.t01	Wine grape	cytosol	63.88	64.53
GSMUA_Achr1P19650_001	Banana	nucleus	65.22	64.14
VIT_08s0007g06400.t01	Wine grape	cytosol	63.55	63.97
KRH67057	Soybean	nucleus	62.21	63.05
KRG95373	Soybean	cytosol	62.21	63.05
KRH67059	Soybean	cytosol, nucleus	61.87	62.71
KRH71867	Soybean	nucleus	60.87	61.69
PGSC0003DMT400061829	Potato	plastid	45.82	61.44
VIT_11s0016g04280.t01	Wine grape	cytosol	28.09	61.31
Solyc01g014850.2.1	Tomato	nucleus	51.17	61.2
Zm00001d036796_P004	Maize	extracellular	61.2	60.8
KRG93085	Soybean	cytosol	59.87	60.27
KRH36330	Soybean	nucleus	59.53	59.93
KXG20371	Sorghum	cytosol	61.2	59.61
PGSC0003DMT400060957	Potato	cytosol	58.53	59.52
Os04t0665700-01	Rice	nucleus	61.2	59.22
Solyc10g080480.1.1	Tomato	nucleus	57.19	59.17
Os06t0618100-01	Rice	nucleus	51.17	59.07
Solyc10g078750.1.1	Tomato	nucleus	57.53	58.7
TraesCS7B01G302400.1	Wheat	cytosol	58.86	58.67
PGSC0003DMT400025445	Potato	cytosol	55.18	58.1
TraesCS7A01G402300.1	Wheat	cytosol	58.19	58.0
TraesCS7D01G396100.2	Wheat	cytosol	58.19	58.0
Os02t0194200-01	Rice	nucleus	58.19	58.0
CDY01104	Canola	cytosol	46.49	57.92
CDY47892	Canola	cytosol	44.48	57.83
PGSC0003DMT400029683	Potato	cytosol	58.19	57.81
TraesCS6B01G194300.1	Wheat	cytosol	56.86	57.24
CDX73836	Canola	cytosol	44.82	57.02
Zm00001d001933_P001	Maize	nucleus	58.53	57.0
Bra034776.1-P	Field mustard	cytosol	46.49	56.97
CDY08453	Canola	cytosol	46.49	56.97
EES04688	Sorghum	nucleus	55.85	56.61
TraesCS2D01G488300.1	Wheat	nucleus, plastid	57.53	56.58
EES11610	Sorghum	cytosol	57.86	56.54
TraesCS2A01G488000.1	Wheat	nucleus, plastid	57.86	56.54
CDY00756	Canola	cytosol	44.48	56.36
TraesCS2B01G515600.1	Wheat	nucleus, plastid	57.86	56.35
Bra001436.1-P	Field mustard	cytosol	43.81	55.74
TraesCS6A01G166900.1	Wheat	cytosol	56.52	55.59
TraesCS6D01G155400.1	Wheat	cytosol	56.19	55.26
AT5G06770.1	Thale cress	cytosol	43.81	54.58
AT3G12130.1	Thale cress	cytosol	44.82	54.03
Bra038697.1-P	Field mustard	cytosol, mitochondrion, nucleus	42.47	51.84
PGSC0003DMT400016195	Potato	cytosol	49.5	51.21
HORVU6Hr1G033840.5	Barley	mitochondrion	57.19	50.15
Solyc01g073940.2.1	Tomato	nucleus	48.16	49.83
TraesCS6D01G155300.1	Wheat	mitochondrion	49.16	48.04
CDY72512	Canola	nucleus	32.78	47.34
Zm00001d046740_P001	Maize	plastid	53.51	47.06
Bra028719.1-P	Field mustard	cytosol	23.41	44.87
CDY05002	Canola	cytosol	23.41	44.87
Solyc03g063200.2.1	Tomato	nucleus	24.41	44.79
Zm00001d053682_P001	Maize	cytosol, mitochondrion, nucleus	52.84	44.13
TraesCS6D01G155200.1	Wheat	cytosol	30.77	44.02
HORVU6Hr1G025870.1	Barley	cytosol	27.76	43.68
TraesCS6B01G194200.1	Wheat	cytosol, mitochondrion, plastid	26.76	41.03
Solyc01g014860.2.1	Tomato	nucleus	6.35	38.78
TraesCS6A01G166800.1	Wheat	cytosol	38.8	37.42
Zm00001d032312_P001	Maize	cytosol	17.06	34.46
TraesCS6A01G166700.1	Wheat	cytosol	34.78	33.02

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr7G20530_001	EnsemblPlants:GSMUA_Achr7P20530_001	EnsemblPlants:GSMUA_Achr7T20530_001	InterPro:IPR000571
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	UniProt:M0TJ90	PFAM:PF00013
PFAM:PF00642	PFAM:PF14608	PFscan:PS50084	PFscan:PS50103	PANTHER:PTHR10288	PANTHER:PTHR10288:SF5
SMART:SM00322	SMART:SM00356	SUPFAM:SSF54791	SUPFAM:SSF90229	UniParc:UPI000295F98D	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

Zinc finger CCCH domain-containing protein 14 [Source:GMGC_GENE;Acc:GSMUA_Achr7G20530_001]

Coordinates

chr7:+:23620572..23625911

Molecular Weight (calculated)

31221.2 Da

IEP (calculated)

9.584

GRAVY (calculated)

-0.337

Length

299 amino acids

Sequence
(BLAST)

001: MDARKRARAD GTTNGGSGAT GPKRIRETDS NPSGLGSKSK PCTKFFSTAG CPFGEGCHFL HYVPGGIAAV SQMTNLGNPT VAAARNLMPP STIPNGLPSS
101: AVKTRMCNKY NTADGCKFGE KCHFAHGEWE LGKPIIPSHD GHMAPSMGGR FAANMEPPQP TGLAAATSFG ASATAKISVD ASLAGAIIGK GGMNTKQICR
201: ITGVKLAIRE HESDPNLRNI ELEGTFDQIK HASSMVRELI VNVSSATSLP PKTSAAGAPN ALGSNYKTKL CDNFTKGSCT FGDRCHFAHG ASELRKTVL

Best Arabidopsis Sequence Match ( AT3G12130.1 )
(BLAST)

001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.