Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G155200.1 | Wheat | cytosol | 58.73 | 88.52 |
| CDY47892 | Canola | cytosol | 32.7 | 44.78 |
| Bra001436.1-P | Field mustard | cytosol | 33.33 | 44.68 |
| Os02t0194200-01 | Rice | nucleus | 42.22 | 44.33 |
| EES04688 | Sorghum | nucleus | 40.63 | 43.39 |
| CDX73836 | Canola | cytosol | 32.06 | 42.98 |
| AT5G06770.1 | Thale cress | cytosol | 32.7 | 42.92 |
| CDY01104 | Canola | cytosol | 32.38 | 42.5 |
| CDY00756 | Canola | cytosol | 31.75 | 42.37 |
| CDY08453 | Canola | cytosol | 32.38 | 41.8 |
| Bra034776.1-P | Field mustard | cytosol | 32.38 | 41.8 |
| TraesCS6A01G166900.1 | Wheat | cytosol | 40.32 | 41.78 |
| TraesCS7A01G402300.1 | Wheat | cytosol | 39.37 | 41.33 |
| AT3G12130.1 | Thale cress | cytosol | 31.43 | 39.92 |
| Bra038697.1-P | Field mustard | cytosol, mitochondrion, nucleus | 29.52 | 37.96 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 36.51 | 37.83 |
| PGSC0003DMT400060957 | Potato | cytosol | 34.92 | 37.41 |
| KRH67057 | Soybean | nucleus | 34.92 | 37.29 |
| VIT_13s0156g00320.t01 | Wine grape | cytosol | 34.92 | 37.16 |
| Solyc10g080480.1.1 | Tomato | nucleus | 33.97 | 37.02 |
| KRH67059 | Soybean | cytosol, nucleus | 34.6 | 36.95 |
| Solyc01g014860.2.1 | Tomato | nucleus | 5.71 | 36.73 |
| KRG95373 | Soybean | cytosol | 34.29 | 36.61 |
| CDY72512 | Canola | nucleus | 23.81 | 36.23 |
| VIT_06s0004g01290.t01 | Wine grape | cytosol | 34.6 | 36.21 |
| Solyc10g078750.1.1 | Tomato | nucleus | 33.65 | 36.18 |
| KRH36330 | Soybean | nucleus | 33.65 | 35.69 |
| KRG93085 | Soybean | cytosol | 33.65 | 35.69 |
| KRH71867 | Soybean | nucleus | 33.33 | 35.59 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 33.33 | 35.35 |
| PGSC0003DMT400029683 | Potato | cytosol | 33.65 | 35.22 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 33.02 | 34.78 |
| PGSC0003DMT400025445 | Potato | cytosol | 30.79 | 34.15 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 32.38 | 33.33 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 37.46 | 32.96 |
| Solyc01g073940.2.1 | Tomato | nucleus | 29.52 | 32.18 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 13.97 | 32.12 |
| PGSC0003DMT400016195 | Potato | cytosol | 29.21 | 31.83 |
| Solyc01g014850.2.1 | Tomato | nucleus | 25.08 | 31.6 |
| Bra028719.1-P | Field mustard | cytosol | 15.56 | 31.41 |
| CDY05002 | Canola | cytosol | 15.56 | 31.41 |
| PGSC0003DMT400061829 | Potato | plastid | 21.27 | 30.04 |
| TraesCS6A01G166800.1 | Wheat | cytosol | 29.21 | 29.68 |
| Solyc03g063200.2.1 | Tomato | nucleus | 12.7 | 24.54 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 |
| InterPro:KH_dom_type_1_sf | PFAM:PF00013 | PFAM:PF00642 | PFscan:PS50084 | PFscan:PS50103 | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF5 | SMART:SM00322 | SMART:SM00356 | SUPFAM:SSF54791 | SUPFAM:SSF90229 | EnsemblPlantsGene:TraesCS6A01G166700 |
| EnsemblPlants:TraesCS6A01G166700.1 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | TIGR:cd00105 | SEG:seg | : |
Description
No Description!
Coordinates
chr6A:-:169912250..169913701
Molecular Weight (calculated)
33245.0 Da
IEP (calculated)
8.367
GRAVY (calculated)
-0.518
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDAREEEGR EKRITYSREL LLAVGGSEAC KALPAGRFHL LLSNDPSTVT LWASGAARGC DCSSRAEARG ARPAGRACGA GHGALPRRAR EPESFQTGVG
101: SKSKPWPCTR FFSTAGCRFG EDCLFTHDFP GGYQAVANLG SLGGEAPSQD EKELSEPLSQ DKSAPPHIER GTAGRHAPPL APNPGTAAPA GFGAPATARI
201: TVDASLAGAV IGRGGATIRE ISRASGARLR IRDHERDAGL KNVELEGTPD QIRHASAMVW EHLPVPGGGR YNGLKTRLCA HFARGSCTYG DGCRFAHSES
301: ELRRPAPAAR EPCGW
101: SKSKPWPCTR FFSTAGCRFG EDCLFTHDFP GGYQAVANLG SLGGEAPSQD EKELSEPLSQ DKSAPPHIER GTAGRHAPPL APNPGTAAPA GFGAPATARI
201: TVDASLAGAV IGRGGATIRE ISRASGARLR IRDHERDAGL KNVELEGTPD QIRHASAMVW EHLPVPGGGR YNGLKTRLCA HFARGSCTYG DGCRFAHSES
301: ELRRPAPAAR EPCGW
001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.