Factsheet for VIT_08s0007g06400.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_13s0019g05080.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06770.1	VIT_13s0019g05080.t01	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g04280.t01	Wine grape	cytosol	39.73	86.13
KRG95373	Soybean	cytosol	76.09	76.61
KRH67059	Soybean	cytosol, nucleus	74.07	74.58
KRH67057	Soybean	nucleus	73.4	73.9
KRH71867	Soybean	nucleus	72.39	72.88
VIT_06s0004g01290.t01	Wine grape	cytosol	72.73	71.76
VIT_13s0156g00320.t01	Wine grape	cytosol	70.03	70.27
Solyc10g078750.1.1	Tomato	nucleus	68.69	69.62
Bra001436.1-P	Field mustard	cytosol	54.88	69.36
CDY47892	Canola	cytosol	53.54	69.13
Solyc10g080480.1.1	Tomato	nucleus	66.33	68.17
PGSC0003DMT400029683	Potato	cytosol	69.02	68.11
CDX73836	Canola	cytosol	53.87	68.09
PGSC0003DMT400025445	Potato	cytosol	64.98	67.96
PGSC0003DMT400060957	Potato	cytosol	67.0	67.69
CDY00756	Canola	cytosol	53.2	66.95
CDY01104	Canola	cytosol	53.87	66.67
CDY08453	Canola	cytosol	53.87	65.57
Bra034776.1-P	Field mustard	cytosol	53.87	65.57
AT5G06770.1	Thale cress	cytosol	51.85	64.17
AT3G12130.1	Thale cress	cytosol	53.2	63.71
GSMUA_Achr7P20530_001	Banana	nucleus	63.97	63.55
Bra038697.1-P	Field mustard	cytosol, mitochondrion, nucleus	50.17	60.82
Os02t0194200-01	Rice	nucleus	60.94	60.33
Zm00001d036796_P004	Maize	extracellular	59.93	59.14
GSMUA_Achr1P19650_001	Banana	nucleus	60.27	58.88
Os06t0618100-01	Rice	nucleus	50.84	58.3
Solyc03g063200.2.1	Tomato	nucleus	31.99	58.28
TraesCS6B01G194300.1	Wheat	cytosol	57.58	57.58
TraesCS6D01G155400.1	Wheat	cytosol	58.25	56.91
TraesCS7B01G302400.1	Wheat	cytosol	57.24	56.67
TraesCS7D01G396100.2	Wheat	cytosol	57.24	56.67
TraesCS6A01G166900.1	Wheat	cytosol	57.91	56.58
KXG20371	Sorghum	cytosol	57.91	56.03
TraesCS7A01G402300.1	Wheat	cytosol	56.57	56.0
EES04688	Sorghum	nucleus	55.56	55.93
Zm00001d001933_P001	Maize	nucleus	57.58	55.7
Os04t0665700-01	Rice	nucleus	57.24	55.02
EES11610	Sorghum	cytosol	55.22	53.59
TraesCS2A01G488000.1	Wheat	nucleus, plastid	54.88	53.27
TraesCS2B01G515600.1	Wheat	nucleus, plastid	54.88	53.09
TraesCS2D01G488300.1	Wheat	nucleus, plastid	53.87	52.63
CDY72512	Canola	nucleus	35.69	51.21
TraesCS6D01G155300.1	Wheat	mitochondrion	51.85	50.33
HORVU6Hr1G033840.5	Barley	mitochondrion	56.9	49.56
Bra028719.1-P	Field mustard	cytosol	24.24	46.15
CDY05002	Canola	cytosol	24.24	46.15
Zm00001d046740_P001	Maize	plastid	52.19	45.59
TraesCS6D01G155200.1	Wheat	cytosol	30.98	44.02
HORVU6Hr1G025870.1	Barley	cytosol	27.61	43.16
TraesCS6B01G194200.1	Wheat	cytosol, mitochondrion, plastid	28.28	43.08
Zm00001d053682_P001	Maize	cytosol, mitochondrion, nucleus	50.51	41.9
TraesCS6A01G166800.1	Wheat	cytosol	40.4	38.71
Zm00001d032312_P001	Maize	cytosol	17.17	34.46
TraesCS6A01G166700.1	Wheat	cytosol	35.35	33.33

Protein Annotations

EntrezGene:100245220	wikigene:100245220	MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	ProteinID:CCB55252
ProteinID:CCB55252.1	UniProt:F6HLJ6	EMBL:FN595991	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	EntrezGene:LOC100245220	wikigene:LOC100245220	PFAM:PF00013	PFAM:PF00642	PFscan:PS50084
PFscan:PS50103	PANTHER:PTHR10288	PANTHER:PTHR10288:SF5	SMART:SM00322	SMART:SM00356	SUPFAM:SSF54791
SUPFAM:SSF90229	TIGR:TC60701	TIGR:TC68236	UniParc:UPI0001983E37	ArrayExpress:VIT_08s0007g06400	EnsemblPlantsGene:VIT_08s0007g06400
EnsemblPlants:VIT_08s0007g06400.t01	unigene:Vvi.15871	RefSeq:XP_002279071	RefSeq:XP_002279071.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:20182027..20189111

Molecular Weight (calculated)

31174.2 Da

IEP (calculated)

9.684

GRAVY (calculated)

-0.449

Length

297 amino acids

Sequence
(BLAST)

001: MDTRKRGRPG GALNANGGFK KSKQEVESLS TGIGSKSKPC TKFFSTSGCP FGESCHFLHY VPGGYNAVAQ MTNQAPILPP ASRNMAGPPP PVPNGSSMPA
101: VKSKMCNKFN TAEGCKFGDK CHFAHGEWEL GKPLAPYHDD PRAMGSIPGR LAGRIEPSPT GPAASFGASA TAKISVDASL AGAIIGKGGV NSKQICRQTG
201: AKLSIREHDS DPNLRNIELE GTFEQIKEAS AMVRELIVNI SAMPGHARTT AMPGGGQAPP ASNYKTKLCD NFTKGSCTFG ERCHFAHGAG ELRKSAI

Best Arabidopsis Sequence Match ( AT3G12130.1 )
(BLAST)

001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.