Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_13s0019g05080.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06770.1 | VIT_13s0019g05080.t01 | AT5G04280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 86.13 | 39.73 |
| KRG95373 | Soybean | cytosol | 71.53 | 33.22 |
| KRH67059 | Soybean | cytosol, nucleus | 70.8 | 32.88 |
| KRH71867 | Soybean | nucleus | 70.07 | 32.54 |
| KRH67057 | Soybean | nucleus | 70.07 | 32.54 |
| VIT_13s0156g00320.t01 | Wine grape | cytosol | 68.61 | 31.76 |
| PGSC0003DMT400025445 | Potato | cytosol | 64.23 | 30.99 |
| PGSC0003DMT400060957 | Potato | cytosol | 66.42 | 30.95 |
| VIT_06s0004g01290.t01 | Wine grape | cytosol | 67.88 | 30.9 |
| Solyc10g080480.1.1 | Tomato | nucleus | 64.96 | 30.8 |
| Solyc10g078750.1.1 | Tomato | nucleus | 64.96 | 30.38 |
| TraesCS6B01G194200.1 | Wheat | cytosol, mitochondrion, plastid | 42.34 | 29.74 |
| PGSC0003DMT400029683 | Potato | cytosol | 64.96 | 29.57 |
| HORVU6Hr1G025870.1 | Barley | cytosol | 40.15 | 28.95 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 61.31 | 28.09 |
| Os06t0618100-01 | Rice | nucleus | 51.09 | 27.03 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 59.85 | 26.97 |
| Os02t0194200-01 | Rice | nucleus | 56.2 | 25.67 |
| CDY47892 | Canola | cytosol | 42.34 | 25.22 |
| CDY01104 | Canola | cytosol | 43.8 | 25.0 |
| Os04t0665700-01 | Rice | nucleus | 56.2 | 24.92 |
| Zm00001d001933_P001 | Maize | nucleus | 55.47 | 24.76 |
| EES04688 | Sorghum | nucleus | 53.28 | 24.75 |
| CDY08453 | Canola | cytosol | 43.8 | 24.59 |
| Bra034776.1-P | Field mustard | cytosol | 43.8 | 24.59 |
| Zm00001d036796_P004 | Maize | extracellular | 54.01 | 24.58 |
| Bra038697.1-P | Field mustard | cytosol, mitochondrion, nucleus | 43.8 | 24.49 |
| Bra001436.1-P | Field mustard | cytosol | 41.61 | 24.26 |
| TraesCS6B01G194300.1 | Wheat | cytosol | 52.55 | 24.24 |
| EES11610 | Sorghum | cytosol | 54.01 | 24.18 |
| TraesCS7A01G402300.1 | Wheat | cytosol | 52.55 | 24.0 |
| CDX73836 | Canola | cytosol | 40.88 | 23.83 |
| KXG20371 | Sorghum | cytosol | 53.28 | 23.78 |
| TraesCS6A01G166900.1 | Wheat | cytosol | 52.55 | 23.68 |
| TraesCS6D01G155400.1 | Wheat | cytosol | 52.55 | 23.68 |
| TraesCS7D01G396100.2 | Wheat | cytosol | 51.82 | 23.67 |
| TraesCS7B01G302400.1 | Wheat | cytosol | 51.82 | 23.67 |
| Zm00001d032312_P001 | Maize | cytosol | 25.55 | 23.65 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 52.55 | 23.45 |
| TraesCS2D01G488300.1 | Wheat | nucleus, plastid | 51.82 | 23.36 |
| CDY00756 | Canola | cytosol | 40.15 | 23.31 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 51.82 | 23.2 |
| TraesCS6D01G155300.1 | Wheat | mitochondrion | 51.82 | 23.2 |
| TraesCS6D01G155200.1 | Wheat | cytosol | 35.04 | 22.97 |
| AT5G06770.1 | Thale cress | cytosol | 37.23 | 21.25 |
| Zm00001d046740_P001 | Maize | plastid | 52.55 | 21.18 |
| HORVU6Hr1G033840.5 | Barley | mitochondrion | 52.55 | 21.11 |
| AT3G12130.1 | Thale cress | cytosol | 37.96 | 20.97 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 53.28 | 20.39 |
| Solyc03g063200.2.1 | Tomato | nucleus | 23.36 | 19.63 |
| CDY05002 | Canola | cytosol | 21.9 | 19.23 |
| Bra028719.1-P | Field mustard | cytosol | 21.9 | 19.23 |
| TraesCS6A01G166800.1 | Wheat | cytosol | 42.34 | 18.71 |
| CDY72512 | Canola | nucleus | 22.63 | 14.98 |
| TraesCS6A01G166700.1 | Wheat | cytosol | 32.12 | 13.97 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | ProteinID:CCB51537 | ProteinID:CCB51537.1 | UniProt:F6HH41 |
| EMBL:FN595756 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR000571 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | PFAM:PF00013 |
| PFAM:PF00642 | PFscan:PS50084 | PFscan:PS50103 | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF5 | SMART:SM00322 |
| SUPFAM:SSF54791 | SUPFAM:SSF90229 | UniParc:UPI0002107F69 | ArrayExpress:VIT_11s0016g04280 | EnsemblPlantsGene:VIT_11s0016g04280 | EnsemblPlants:VIT_11s0016g04280.t01 |
| InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | : | : | : | : |
Description
No Description!
Coordinates
chr11:+:3571380..3572024
Molecular Weight (calculated)
14761.5 Da
IEP (calculated)
7.455
GRAVY (calculated)
-0.407
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MPADNSKMCN KFNTTEGCKF GDKCHFAHGK WELSKPLAPY HDDPRAIGSI PGSLAGRIES SPIDPVASFG ASAITKISVD ASLVEAIIGK GGVNSKQICS
101: QTGAKLSIRE HDSDPNMRNI ELERTFEQIK EASAMVR
101: QTGAKLSIRE HDSDPNMRNI ELERTFEQIK EASAMVR
001: MFATEMESIS TGLGSKSKPC TKFFSTSGCP FGDNCHFLHY VPGGYNAAAQ MTNLRPPVSQ VSRNMQGSGG PGGRFSGRGD PGSGPVSIFG ASTSKISVDA
101: SLAGAIIGKG GIHSKQICRE TGAKLSIKDH ERDPNLKIIE LEGTFEQINV ASGMVRELIG RLGSVKKPQG IGGPEGKPHP GSNYKTKICD RYSKGNCTYG
201: DRCHFAHGES ELRRSGIA
101: SLAGAIIGKG GIHSKQICRE TGAKLSIKDH ERDPNLKIIE LEGTFEQINV ASGMVRELIG RLGSVKKPQG IGGPEGKPHP GSNYKTKICD RYSKGNCTYG
201: DRCHFAHGES ELRRSGIA
Arabidopsis Description
Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.