Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06770.1 | CDX80910 | AT5G04280.1 | 21798944 |
| AT5G06770.1 | CDY11283 | AT5G04280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05002 | Canola | cytosol | 64.25 | 85.26 |
| CDY47892 | Canola | cytosol | 53.14 | 47.83 |
| AT5G06770.1 | Thale cress | cytosol | 54.11 | 46.67 |
| CDX73836 | Canola | cytosol | 52.66 | 46.38 |
| CDY00756 | Canola | cytosol | 51.69 | 45.34 |
| CDY01104 | Canola | cytosol | 51.21 | 44.17 |
| CDY08453 | Canola | cytosol | 51.21 | 43.44 |
| PGSC0003DMT400025445 | Potato | cytosol | 50.72 | 36.97 |
| KRH67057 | Soybean | nucleus | 51.69 | 36.27 |
| KRG95373 | Soybean | cytosol | 51.21 | 35.93 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 51.21 | 35.69 |
| KRH67059 | Soybean | cytosol, nucleus | 50.24 | 35.25 |
| PGSC0003DMT400060957 | Potato | cytosol | 49.76 | 35.03 |
| Solyc10g080480.1.1 | Tomato | nucleus | 48.79 | 34.95 |
| KRH71867 | Soybean | nucleus | 49.28 | 34.58 |
| Solyc10g078750.1.1 | Tomato | nucleus | 48.31 | 34.13 |
| Zm00001d001933_P001 | Maize | nucleus | 50.24 | 33.88 |
| Os04t0665700-01 | Rice | nucleus | 49.76 | 33.33 |
| PGSC0003DMT400029683 | Potato | cytosol | 48.31 | 33.22 |
| TraesCS6B01G194300.1 | Wheat | cytosol | 47.34 | 33.0 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 47.34 | 32.78 |
| EES11610 | Sorghum | cytosol | 48.31 | 32.68 |
| Os02t0194200-01 | Rice | nucleus | 46.38 | 32.0 |
| TraesCS6A01G166900.1 | Wheat | cytosol | 46.86 | 31.91 |
| TraesCS6D01G155400.1 | Wheat | cytosol | 46.38 | 31.58 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 46.38 | 31.58 |
| EES04688 | Sorghum | nucleus | 44.93 | 31.53 |
| TraesCS6D01G155200.1 | Wheat | cytosol | 30.92 | 30.62 |
| TraesCS2D01G488300.1 | Wheat | nucleus, plastid | 43.96 | 29.93 |
| Zm00001d036796_P004 | Maize | extracellular | 43.48 | 29.9 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 43.96 | 29.74 |
| Os06t0618100-01 | Rice | nucleus | 37.2 | 29.73 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 43.96 | 29.64 |
| TraesCS7B01G302400.1 | Wheat | cytosol | 42.51 | 29.33 |
| TraesCS7D01G396100.2 | Wheat | cytosol | 42.51 | 29.33 |
| TraesCS7A01G402300.1 | Wheat | cytosol | 42.51 | 29.33 |
| KXG20371 | Sorghum | cytosol | 43.0 | 28.99 |
| Solyc03g063200.2.1 | Tomato | nucleus | 22.22 | 28.22 |
| HORVU6Hr1G033840.5 | Barley | mitochondrion | 44.44 | 26.98 |
| TraesCS6D01G155300.1 | Wheat | mitochondrion | 37.2 | 25.16 |
| Zm00001d046740_P001 | Maize | plastid | 40.1 | 24.41 |
| Zm00001d032312_P001 | Maize | cytosol | 17.39 | 24.32 |
| TraesCS6A01G166700.1 | Wheat | cytosol | 36.23 | 23.81 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 40.58 | 23.46 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 14.98 | 22.63 |
| HORVU6Hr1G025870.1 | Barley | cytosol | 20.29 | 22.11 |
| TraesCS6A01G166800.1 | Wheat | cytosol | 29.47 | 19.68 |
| TraesCS6B01G194200.1 | Wheat | cytosol, mitochondrion, plastid | 15.94 | 16.92 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | GO:A0A078K3N2 | UniProt:A0A078K3N2 | EnsemblPlants:CDY72512 |
| ProteinID:CDY72512 | ProteinID:CDY72512.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00030287001 | InterPro:IPR000571 | InterPro:IPR036612 | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf |
| PFAM:PF00013 | PFAM:PF00642 | PFscan:PS50084 | PFscan:PS50103 | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF5 |
| SMART:SM00356 | SUPFAM:SSF54791 | SUPFAM:SSF90229 | UniParc:UPI0004EE2C05 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng78050DBnaCnng78050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K3N2]
Coordinates
chrLK051508:-:251..1627
Molecular Weight (calculated)
22812.8 Da
IEP (calculated)
9.069
GRAVY (calculated)
-0.772
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTHKRGHSD TVSSSNSNVG SKRPKQKMES ISTGLRSKTK PCKDFFSTNG CPLGENCRFL HYVPGGYKAV AKMLNLEPQI AESSKKTQTS SSASVAAKII
101: VTAIIGKDGN RTKQLCRETG VKLPIEDHER DPNLKNVEID GNYDQINEAN GRMRELIRRF GSDPANSAPR SSYKSELCEK FAAGECNYGD RCHFAHGVAE
201: LRWSGID
101: VTAIIGKDGN RTKQLCRETG VKLPIEDHER DPNLKNVEID GNYDQINEAN GRMRELIRRF GSDPANSAPR SSYKSELCEK FAAGECNYGD RCHFAHGVAE
201: LRWSGID
001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.