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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • plastid 1
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra038697.1-P Field mustard cytosol, mitochondrion, nucleus 91.74 86.12
CDY00756 Canola cytosol 83.48 81.36
CDX73836 Canola cytosol 83.04 81.28
CDY01104 Canola cytosol 83.48 80.0
CDY08453 Canola cytosol 84.78 79.92
AT3G12130.1 Thale cress cytosol 82.61 76.61
VIT_08s0007g06400.t01 Wine grape cytosol 69.13 53.54
CDY72512 Canola nucleus 47.83 53.14
KRG95373 Soybean cytosol 66.96 52.2
KRH67059 Soybean cytosol, nucleus 65.22 50.85
KRH67057 Soybean nucleus 65.22 50.85
PGSC0003DMT400025445 Potato cytosol 61.74 50.0
Solyc10g078750.1.1 Tomato nucleus 63.48 49.83
Solyc10g080480.1.1 Tomato nucleus 62.17 49.48
PGSC0003DMT400060957 Potato cytosol 63.04 49.32
PGSC0003DMT400029683 Potato cytosol 64.35 49.17
KRH71867 Soybean nucleus 62.17 48.47
CDY05002 Canola cytosol 32.61 48.08
Os02t0194200-01 Rice nucleus 61.74 47.33
Zm00001d036796_P004 Maize extracellular 60.0 45.85
TraesCS6B01G194300.1 Wheat cytosol 59.13 45.79
TraesCS7A01G402300.1 Wheat cytosol 58.7 45.0
TraesCS7B01G302400.1 Wheat cytosol 58.7 45.0
TraesCS7D01G396100.2 Wheat cytosol 58.7 45.0
KXG20371 Sorghum cytosol 59.57 44.63
GSMUA_Achr7P20530_001 Banana nucleus 57.83 44.48
TraesCS6D01G155400.1 Wheat cytosol 58.7 44.41
GSMUA_Achr1P19650_001 Banana nucleus 58.7 44.41
Os06t0618100-01 Rice nucleus 49.57 44.02
EES11610 Sorghum cytosol 58.26 43.79
TraesCS6A01G166900.1 Wheat cytosol 57.83 43.75
EES04688 Sorghum nucleus 56.09 43.73
Os04t0665700-01 Rice nucleus 58.7 43.69
Zm00001d001933_P001 Maize nucleus 58.26 43.65
TraesCS2B01G515600.1 Wheat nucleus, plastid 56.52 42.35
VIT_11s0016g04280.t01 Wine grape cytosol 25.22 42.34
TraesCS2A01G488000.1 Wheat nucleus, plastid 55.22 41.5
TraesCS2D01G488300.1 Wheat nucleus, plastid 54.35 41.12
TraesCS6D01G155200.1 Wheat cytosol 36.96 40.67
HORVU6Hr1G033840.5 Barley mitochondrion 57.83 39.0
HORVU6Hr1G025870.1 Barley cytosol 32.17 38.95
TraesCS6D01G155300.1 Wheat mitochondrion 49.57 37.25
Zm00001d046740_P001 Maize plastid 52.17 35.29
Solyc03g063200.2.1 Tomato nucleus 24.78 34.97
TraesCS6A01G166700.1 Wheat cytosol 44.78 32.7
Zm00001d053682_P001 Maize cytosol, mitochondrion, nucleus 50.87 32.68
Zm00001d032312_P001 Maize cytosol 20.87 32.43
TraesCS6A01G166800.1 Wheat cytosol 35.65 26.45
TraesCS6B01G194200.1 Wheat cytosol, mitochondrion, plastid 22.17 26.15
Protein Annotations
MapMan:15.5.16Gene3D:3.30.1370.10Gene3D:4.10.1000.10GO:A0A078ICP9UniProt:A0A078ICP9EnsemblPlants:CDY47892
ProteinID:CDY47892ProteinID:CDY47892.1GO:GO:0003674GO:GO:0003676GO:GO:0003723GO:GO:0005488
GO:GO:0046872EnsemblPlantsGene:GSBRNA2T00088405001InterPro:IPR000571InterPro:IPR036612InterPro:KH_domInterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sfPFAM:PF00013PFAM:PF00642PFscan:PS50084PFscan:PS50103PANTHER:PTHR10288
PANTHER:PTHR10288:SF5SMART:SM00322SMART:SM00356SUPFAM:SSF54791SUPFAM:SSF90229UniParc:UPI0004EE1A25
InterPro:Znf_CCCHInterPro:Znf_CCCH_sfSEG:seg:::
Description
BnaAnng09240DBnaAnng09240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ICP9]
Coordinates
chrLK032744:+:2627..4995
Molecular Weight (calculated)
24219.6 Da
IEP (calculated)
9.784
GRAVY (calculated)
-0.577
Length
230 amino acids
Sequence
(BLAST)
001: MDTRKRAGSF NSNGGGGGFK KSKQEMESYS TGLGSKSKPC TKFFSTSGCP FGDNCHFLHY VPGGYNAVAQ LTNMALPMPQ ASRNMQGPGE SGPGHVSSFG
101: ASATAKISVD ASLAGAIIGK GGVSSKQICR QTGAKLSIQD HERDPNLKNI ELEGTFEQIN EASVMVRELI GRLNSAASRR PPGGGGEGKP HPGSNFKTKM
201: CERFAKGNCT FGDRCHFAHG EAELRRSGVA
Best Arabidopsis Sequence Match ( AT3G12130.1 )
(BLAST)
001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.