Factsheet for VIT_06s0004g01290.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0156g00320.t01	Wine grape	cytosol	74.75	76.01
KRH36330	Soybean	nucleus	72.76	73.74
KRG93085	Soybean	cytosol	72.09	73.06
VIT_08s0007g06400.t01	Wine grape	cytosol	71.76	72.73
PGSC0003DMT400061829	Potato	plastid	50.5	68.16
VIT_11s0016g04280.t01	Wine grape	cytosol	30.9	67.88
Solyc01g014850.2.1	Tomato	nucleus	55.81	67.2
GSMUA_Achr7P20530_001	Banana	nucleus	66.45	66.89
Solyc01g014860.2.1	Tomato	nucleus	10.63	65.31
GSMUA_Achr1P19650_001	Banana	nucleus	65.78	65.13
Os02t0194200-01	Rice	nucleus	61.13	61.33
EES04688	Sorghum	nucleus	58.8	60.0
Zm00001d036796_P004	Maize	extracellular	59.8	59.8
TraesCS6B01G194300.1	Wheat	cytosol	58.8	59.6
Os06t0618100-01	Rice	nucleus	50.83	59.07
KXG20371	Sorghum	cytosol	60.13	58.96
TraesCS7B01G302400.1	Wheat	cytosol	57.81	58.0
TraesCS6D01G155400.1	Wheat	cytosol	58.47	57.89
TraesCS6A01G166900.1	Wheat	cytosol	58.14	57.57
TraesCS7D01G396100.2	Wheat	cytosol	57.14	57.33
TraesCS7A01G402300.1	Wheat	cytosol	57.14	57.33
Os04t0665700-01	Rice	nucleus	58.8	57.28
TraesCS2D01G488300.1	Wheat	nucleus, plastid	55.48	54.93
EES11610	Sorghum	cytosol	55.81	54.9
TraesCS2A01G488000.1	Wheat	nucleus, plastid	55.15	54.25
Zm00001d001933_P001	Maize	nucleus	55.15	54.07
TraesCS2B01G515600.1	Wheat	nucleus, plastid	54.49	53.42
TraesCS6D01G155300.1	Wheat	mitochondrion	51.83	50.98
HORVU6Hr1G033840.5	Barley	mitochondrion	56.81	50.15
Zm00001d046740_P001	Maize	plastid	54.15	47.94
TraesCS6B01G194200.1	Wheat	cytosol, mitochondrion, plastid	29.57	45.64
Zm00001d053682_P001	Maize	cytosol, mitochondrion, nucleus	54.15	45.53
TraesCS6D01G155200.1	Wheat	cytosol	31.56	45.45
HORVU6Hr1G025870.1	Barley	cytosol	26.58	42.11
TraesCS6A01G166800.1	Wheat	cytosol	41.53	40.32
TraesCS6A01G166700.1	Wheat	cytosol	36.21	34.6
Zm00001d032312_P001	Maize	cytosol	15.95	32.43

Protein Annotations

EntrezGene:100263958	wikigene:100263958	MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	ProteinID:CCB43766
ProteinID:CCB43766.1	UniProt:F6GUE5	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	EntrezGene:LOC100263958	wikigene:LOC100263958	PFAM:PF00013	PFAM:PF00642	PFAM:PF14608
PFscan:PS50084	PFscan:PS50103	PANTHER:PTHR10288	PANTHER:PTHR10288:SF154	SMART:SM00322	SMART:SM00356
SUPFAM:SSF54791	SUPFAM:SSF90229	TIGR:TC57444	UniParc:UPI000198372C	ArrayExpress:VIT_06s0004g01290	EnsemblPlantsGene:VIT_06s0004g01290
EnsemblPlants:VIT_06s0004g01290.t01	unigene:Vvi.12629	RefSeq:XP_002285629	RefSeq:XP_002285629.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:1538709..1545863

Molecular Weight (calculated)

31610.6 Da

IEP (calculated)

9.595

GRAVY (calculated)

-0.460

Length

301 amino acids

Sequence
(BLAST)

001: MELGGARKRG RQEGTLNGNG GFKKSKQEME SFSSGIGSKS KPCTKFFSTS GCPFGEGCHF LHYVPGGIKA VSQMVNLGGN TPLAPPARNP AVPPSFPDGS
101: SPPAVKTRLC NKYNSAEGCK FGDKCHFAHG EWELGKPTLP SHHEDHRGMG SGRLAGRLEP PPPGLAAAAS FGASATAKIS VDASLAGAII GKSGVNSKQI
201: CRLTGAKLSI KDHDSDPNLR NIELEGTFDQ IKQASAMVRE LIVNISSASG PPMRNPAMQA SAAANNFKTK LCENFTKGSC TFGERCHFAH GADELRKPAG
301: M

Best Arabidopsis Sequence Match ( AT3G12130.1 )
(BLAST)

001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.