Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g074330.1.1 | Tomato | plastid | 50.31 | 70.93 |
| Solyc05g043210.1.1 | Tomato | plastid | 54.38 | 68.77 |
| Solyc05g042180.1.1 | Tomato | plastid | 41.25 | 48.35 |
| Solyc05g041740.1.1 | Tomato | plastid | 25.62 | 39.05 |
| PGSC0003DMT400076105 | Potato | plastid | 50.94 | 35.28 |
| Os10t0564000-01 | Rice | cytosol | 32.19 | 22.49 |
| TraesCS1B01G229900.1 | Wheat | cytosol | 31.25 | 22.27 |
| TraesCS1D01G218700.1 | Wheat | cytosol | 31.25 | 22.22 |
| Zm00001d029973_P001 | Maize | plasma membrane | 30.94 | 22.1 |
| TraesCS1A01G216900.1 | Wheat | cytosol | 30.94 | 22.0 |
| EER94472 | Sorghum | cytosol | 30.62 | 21.68 |
| Zm00001d000030_P001 | Maize | cytosol, extracellular, nucleus, plasma membrane | 29.38 | 21.32 |
| HORVU1Hr1G055480.1 | Barley | plastid | 31.88 | 20.32 |
| Solyc07g008490.2.1 | Tomato | nucleus | 30.31 | 20.12 |
| TraesCS6B01G113100.1 | Wheat | cytosol | 27.5 | 18.84 |
| Os02t0125500-00 | Rice | cytosol | 25.62 | 18.68 |
| GSMUA_Achr8P14980_001 | Banana | cytosol | 32.5 | 18.57 |
| TraesCS6A01G084000.1 | Wheat | cytosol | 27.5 | 18.37 |
| HORVU6Hr1G014510.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 27.81 | 17.98 |
| GSMUA_Achr11P... | Banana | mitochondrion | 31.25 | 17.45 |
| KXG29352 | Sorghum | cytosol | 27.5 | 17.05 |
| Zm00001d015093_P001 | Maize | cytosol | 23.75 | 16.24 |
| Solyc06g084000.2.1 | Tomato | nucleus | 11.56 | 15.61 |
| Solyc09g066120.2.1 | Tomato | nucleus | 23.75 | 15.45 |
| Solyc06g084010.2.1 | Tomato | nucleus | 14.69 | 14.55 |
| Solyc01g097010.2.1 | Tomato | nucleus | 15.31 | 13.5 |
| Solyc01g090480.2.1 | Tomato | nucleus | 13.44 | 9.68 |
| Solyc12g055790.1.1 | Tomato | nucleus | 6.56 | 8.43 |
| Solyc05g007810.2.1 | Tomato | nucleus | 13.75 | 8.27 |
| Solyc08g048500.2.1 | Tomato | nucleus | 13.75 | 7.13 |
| Solyc02g088120.2.1 | Tomato | nucleus | 11.25 | 6.86 |
| Solyc02g067210.2.1 | Tomato | nucleus | 12.81 | 6.66 |
| Solyc03g082980.2.1 | Tomato | nucleus | 13.44 | 6.44 |
| Solyc03g034200.2.1 | Tomato | nucleus | 14.06 | 6.36 |
| Solyc01g106020.2.1 | Tomato | plastid | 12.5 | 6.19 |
| Solyc12g055780.1.1 | Tomato | cytosol, nucleus | 6.25 | 5.41 |
| Solyc11g010840.1.1 | Tomato | plastid | 10.31 | 5.38 |
| Solyc04g077060.2.1 | Tomato | nucleus | 6.25 | 4.23 |
Protein Annotations
| EnsemblPlants:Solyc05g043200.1.1 | EnsemblPlantsGene:Solyc05g043200.1 | Gene3D:3.30.1370.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF132 | PFAM:PF00013 | PFscan:PS50084 | SEG:seg | SMART:SM00322 | SUPFAM:SSF54791 |
| UniParc:UPI00027666D8 | UniProt:K4C0K2 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5:-:55455755..55460306
Molecular Weight (calculated)
35474.2 Da
IEP (calculated)
10.182
GRAVY (calculated)
-0.247
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGAGYQAEK PGQPFPYVPI ASAFMAPALF ENVFQKMWPP LPKSLAVRSG SFATGESVQK WPGWPWDNVF KLVVPIAKVG GIIGRRGEVV NRMCKETGAS
101: IRVLEGPDAD QIVLISGREN PNAEVSPAMD AAIRNFKCVV GADKPQYQPS RPTSATVSNY QDPYLLDHGT AVDSKTPRST LPRYGWDIVK KVNVSILFPS
201: RITKLMQVPL GYAEEIIGTE GCDIAYIRRT SGATLTMSPL TTTKSQPQEC MGRVSLSLVL FHFMETLILH HLRFHVRLSK KCKVQDTRPR NPGNHSPMCQ
301: SLAHSGPRRC LKMFSKRVHL
101: IRVLEGPDAD QIVLISGREN PNAEVSPAMD AAIRNFKCVV GADKPQYQPS RPTSATVSNY QDPYLLDHGT AVDSKTPRST LPRYGWDIVK KVNVSILFPS
201: RITKLMQVPL GYAEEIIGTE GCDIAYIRRT SGATLTMSPL TTTKSQPQEC MGRVSLSLVL FHFMETLILH HLRFHVRLSK KCKVQDTRPR NPGNHSPMCQ
301: SLAHSGPRRC LKMFSKRVHL
001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL
Arabidopsis Description
PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.