Factsheet for Solyc07g008490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046406	Potato	cytosol	96.47	78.81
KRH12329	Soybean	cytosol, nucleus	57.26	62.44
VIT_11s0052g00030.t01	Wine grape	plastid	60.17	62.23
KRH19104	Soybean	nucleus	56.02	61.93
KRH37335	Soybean	cytosol, nucleus	56.43	61.4
KRH02776	Soybean	nucleus	55.39	61.24
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	47.51	51.93
Zm00001d029973_P001	Maize	plasma membrane	48.13	51.79
Os10t0564000-01	Rice	cytosol	48.96	51.53
TraesCS1A01G216900.1	Wheat	cytosol	47.72	51.11
TraesCS1D01G218700.1	Wheat	cytosol	47.51	50.89
TraesCS1B01G229900.1	Wheat	cytosol	47.1	50.56
Bra019133.1-P	Field mustard	cytosol	41.7	50.5
EER94472	Sorghum	cytosol	47.3	50.44
AT4G26000.1	Thale cress	cytosol	49.59	48.28
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	47.51	47.71
CDY42768	Canola	cytosol	48.55	47.46
CDX92741	Canola	cytosol	48.55	47.46
GSMUA_Achr8P14980_001	Banana	cytosol	54.56	46.96
HORVU1Hr1G055480.1	Barley	plastid	47.93	46.02
Solyc05g041740.1.1	Tomato	plastid	19.09	43.81
GSMUA_Achr11P...	Banana	mitochondrion	51.45	43.28
Solyc08g074330.1.1	Tomato	plastid	19.92	42.29
Bra013940.1-P	Field mustard	cytosol	36.1	40.94
CDX89376	Canola	cytosol	36.1	40.94
Solyc05g043210.1.1	Tomato	plastid	20.95	39.92
CDY65294	Canola	cytosol	36.31	39.86
Solyc01g097010.2.1	Tomato	nucleus	29.25	38.84
Solyc05g042180.1.1	Tomato	plastid	20.33	35.9
Os02t0125500-00	Rice	cytosol	32.57	35.76
TraesCS6B01G113100.1	Wheat	cytosol	34.65	35.76
Solyc06g084000.2.1	Tomato	nucleus	17.43	35.44
TraesCS6A01G084000.1	Wheat	cytosol	34.85	35.07
Solyc09g066120.2.1	Tomato	nucleus	35.68	34.96
Zm00001d015093_P001	Maize	cytosol	32.57	33.55
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	33.82	32.93
KXG29352	Sorghum	cytosol	34.85	32.56
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	20.12	30.31
Solyc06g084010.2.1	Tomato	nucleus	16.6	24.77
Solyc12g055790.1.1	Tomato	nucleus	10.58	20.48
Solyc01g090480.2.1	Tomato	nucleus	17.22	18.69
Solyc05g007810.2.1	Tomato	nucleus	20.12	18.23
Solyc02g088120.2.1	Tomato	nucleus	17.84	16.38
Solyc11g010840.1.1	Tomato	plastid	19.5	15.33
Solyc02g067210.2.1	Tomato	nucleus	19.29	15.1
Solyc04g077060.2.1	Tomato	nucleus	13.69	13.95
Solyc08g048500.2.1	Tomato	nucleus	16.8	13.13
Solyc01g106020.2.1	Tomato	plastid	17.01	12.69
Solyc03g034200.2.1	Tomato	nucleus	18.46	12.59
Solyc03g082980.2.1	Tomato	nucleus	14.73	10.63
Solyc12g055780.1.1	Tomato	cytosol, nucleus	5.39	7.03

Protein Annotations

Gene3D:3.30.1370.10	MapMan:35.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006396	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009299
GO:GO:0009628	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0048367	GO:GO:0048467
GO:GO:0048577	GO:GO:0048579	InterPro:IPR036612	UniProt:K4CBW8	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF132	SMART:SM00322
SUPFAM:SSF54791	EnsemblPlantsGene:Solyc07g008490.2	EnsemblPlants:Solyc07g008490.2.1	UniParc:UPI000276B40D	SEG:seg	:

Description

RNA-binding KH domain-containing protein PEPPER [Source:Projected from Arabidopsis thaliana (AT4G26000) UniProtKB/Swiss-Prot;Acc:Q9SZH4]

Coordinates

chr7:-:3392921..3399097

Molecular Weight (calculated)

51693.2 Da

IEP (calculated)

5.917

GRAVY (calculated)

-0.301

Length

482 amino acids

Sequence
(BLAST)

001: MASIEQIQNG SLVTHEFEDS QVNPEEADGG LVKIGQEVSI LKPKWPGWPG SCVFRLIVPV LKVGSIIGRK GELVKKMCEE TGAKIRVLDG PPSSPDRVVL
101: ISGKEELEAA LSPAMVAVIR VFKRVTGLSE GEDDVNLSGV AGAAFCSIRL LVASSQAVNL IGKQGSLIKP IQQNTGASIR VLSNDEMSIY ATSDERIVEI
201: QGEALKVLKA LELVIGHLRK FLVDHSVLPL FEKNYNTPAV QERETEPWSE RTMLNTSRSG LGDYPPRSGL GDYPPRSGLG DYPPRSGLGD YPPRSGLGDY
301: PPPTKRDSLF PERESQLDSH YHSTGLSLYG QDFGLSGTRT SGVGRAGNSV ITQISQTVQM QIPLTYAEDI IGIGGANIAY IRRTSGAVLT VQESRGLSDE
401: ITVEIKGMSS QVQTAQQLIQ EFMSSHKDSL PSSYGQLDTG LRQSSYSNLG GGSYPSSSYG GHHYGGGYGS FGSGGGYSSY RS

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.