CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12329	Soybean	cytosol, nucleus	94.58	94.8
KRH19104	Soybean	nucleus	76.07	77.29
KRH02776	Soybean	nucleus	75.39	76.61
VIT_11s0052g00030.t01	Wine grape	plastid	69.53	66.09
Solyc07g008490.2.1	Tomato	nucleus	61.4	56.43
Zm00001d029973_P001	Maize	plasma membrane	54.85	54.24
Zm00001d000030_P001	Maize	cytosol, extracellular, nucleus, plasma membrane	53.27	53.51
EER94472	Sorghum	cytosol	54.18	53.1
Bra019133.1-P	Field mustard	cytosol	47.63	53.02
TraesCS1D01G218700.1	Wheat	cytosol	53.72	52.89
TraesCS1B01G229900.1	Wheat	cytosol	53.27	52.56
TraesCS1A01G216900.1	Wheat	cytosol	53.27	52.44
AT4G26000.1	Thale cress	cytosol	57.56	51.52
Os10t0564000-01	Rice	cytosol	52.82	51.09
CDX92741	Canola	cytosol	56.43	50.71
CDY42768	Canola	cytosol	55.98	50.3
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	54.18	50.0
HORVU1Hr1G055480.1	Barley	plastid	53.95	47.61
PGSC0003DMT400046406	Potato	cytosol	61.85	46.44
GSMUA_Achr8P14980_001	Banana	cytosol	58.01	45.89
GSMUA_Achr11P...	Banana	mitochondrion	56.21	43.46
Bra013940.1-P	Field mustard	cytosol	40.41	42.12
CDX89376	Canola	cytosol	40.41	42.12
CDY65294	Canola	cytosol	41.53	41.91
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	37.7	37.7
KRG97000	Soybean	nucleus	36.79	36.55
TraesCS6B01G113100.1	Wheat	cytosol	38.15	36.19
Os02t0125500-00	Rice	cytosol	35.67	35.99
Zm00001d015093_P001	Maize	cytosol	36.79	34.83
TraesCS6A01G084000.1	Wheat	cytosol	37.47	34.66
KXG29352	Sorghum	cytosol	39.5	33.91
HORVU6Hr1G014510.1	Barley	cytosol, mitochondrion, nucleus, plastid	37.25	33.33
KRH67322	Soybean	nucleus	37.47	31.38
KRG95633	Soybean	nucleus	37.47	30.91
KRH71306	Soybean	nucleus	34.09	30.51
KRH32136	Soybean	cytosol	36.57	28.67
KRH58152	Soybean	cytosol	7.67	26.77
KRH00973	Soybean	nucleus, plastid	17.38	21.27
KRH40252	Soybean	cytosol, golgi, nucleus, plastid	17.38	19.85
KRH01196	Soybean	nucleus	21.9	17.86
KRH40065	Soybean	nucleus	21.44	17.59
KRH18467	Soybean	nucleus	20.99	16.97
KRG93559	Soybean	nucleus	20.99	16.97
KRH42565	Soybean	nucleus	20.99	14.88
KRH49838	Soybean	plastid	19.41	14.58
KRH58669	Soybean	endoplasmic reticulum, nucleus	20.32	14.49
KRH39475	Soybean	plastid	19.64	14.24
KRH42077	Soybean	plastid	18.74	14.14
KRH74462	Soybean	nucleus	19.64	14.12
KRH47290	Soybean	mitochondrion, nucleus	15.58	12.34
KRH21739	Soybean	plastid	19.86	12.31
KRH53532	Soybean	nucleus	17.83	12.21
KRH64403	Soybean	nucleus	17.61	12.11
KRH62129	Soybean	plastid	18.28	11.95
KRH52837	Soybean	plastid	17.83	11.69
KRH44614	Soybean	mitochondrion, nucleus	14.9	11.68
KRH10613	Soybean	plastid	18.06	11.0

Protein Annotations

EntrezGene:100817448	Gene3D:3.30.1370.10	MapMan:35.1	EMBL:ACUP02005437	EMBL:ACUP02005438	EnsemblPlantsGene:GLYMA_09G059900
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1L1E2	InterPro:IPR036612
InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRH37335	ProteinID:KRH37335	ProteinID:KRH37335.1
PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF132	SMART:SM00322	SUPFAM:SSF54791
UniParc:UPI0002339165	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:5539906..5546557

Molecular Weight (calculated)

47566.3 Da

IEP (calculated)

5.190

GRAVY (calculated)

-0.179

Length

443 amino acids

Sequence
(BLAST)

001: MATAEPLQNG SAENPLPVDN APAAQPPTET EADAAATAST PPEKRWPGWP GDCVFRLIVP VGKVGSIIGR KGELIKKMCE ETRSRIRVLD APLGTPDRIV
101: LVSGKEDPEA ALSPAMDAVV RIFKRVSGFS ETDAENQESA AGLAFSSIRL LVASTQAINL IGKQGSLIKS IQENTSASVR VLSGDEVQFY ATANERIVEI
201: QGEALKVLKA LEAVVGHLRK FLVDHSVLPL FEKTYNAPTS QDRQAETWSD KSLLHTSSRT SIFADIPLST KRDSVLADRE SQLDLFLPSS TMSLYGQDSS
301: LSGVHSSALG RVGAPIVTTV IQTMQIPLSY AEDIIGIQGT NIEYIRRTSG AILTVQESRV PDEIVVEIKG TSSEVQTAQQ LIQDVISSHK EPVTSSYGRL
401: DAVPRSSYSH LGTTSRLPPS SLSSQPYTGY GASGLGDYST FRL

Best Arabidopsis Sequence Match ( AT4G26000.1 )
(BLAST)

001: MAAVADSVEN NGSINLPENE NLIPAGFSAA ALLDENSGAF PELNQPDSLA AAETTFPDTN DSAEERWPGW PGDCVFRMIV PVTKVGAIIG RKGDFIKKMC
101: EETRARIKVL DGPVNTPDRI VLISGKEEPE AYMSPAMDAV LRVFRRVSGL PDNDDDDVQN AGSVFSSVRL LVASTQAINL IGKQGSLIKS IVENSGASVR
201: ILSEEETPFY AAQDERIVDL QGEALKILKA LEAIVGHLRR FLVDHTVVPL FEKQYLARVS QTRQEEPLAE SKSSLHTISS NLMEPDFSLL ARREPLFLER
301: DSRVDSRVQP SGVSIYSQDP VLSARHSPGL ARVSSAFVTQ VSQTMQIPFS YAEDIIGVEG ANIAYIRRRS GATITIKESP HPDQITVEIK GTTSQVQTAE
401: QLIQEFIINH KEPVSVSGGY ARIDSGYVPA YPPQLSNRQE PLPSTYMGTE PVQYRPTAYS QLGGPSTYTP TLTGQTYGSE YRPASDVGGY SSYNL

Arabidopsis Description

PEPRNA-binding KH domain-containing protein PEPPER [Source:UniProtKB/Swiss-Prot;Acc:Q9SZH4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.