CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90774
KRG95373
KRH03258
KRH35987
KRH42233
KRH57096
KRH58350
KRH67057
KRH67059
KRH71867

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53060.1	KRH42233	AT3G60360.1	21798944
AT5G53060.1	KRH58350	AT3G60360.1	21798944
AT5G53060.1	KRH03258	AT4G24680.1	21798944
AT5G53060.1	KRH57096	AT4G24680.1	21798944
AT5G53060.1	KRG90774	AT5G04280.1	21798944
AT5G53060.1	KRH35987	AT5G04280.1	21798944
AT5G53060.1	KRG95373	AT5G06770.1	21798944
AT5G53060.1	KRH67057	AT5G06770.1	21798944
AT5G53060.1	KRH67059	AT5G06770.1	21798944
AT5G53060.1	KRH71867	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64403	Soybean	nucleus	95.52	95.96
VIT_16s0098g01660.t01	Wine grape	nucleus	71.87	70.35
Solyc03g082980.2.1	Tomato	nucleus	68.16	66.02
PGSC0003DMT400047665	Potato	nucleus	67.39	63.56
CDX96185	Canola	nucleus	62.6	63.18
AT5G53060.1	Thale cress	nucleus	63.21	62.73
Bra003085.1-P	Field mustard	nucleus	61.67	62.44
CDY56908	Canola	nucleus	60.74	61.79
CDY49453	Canola	nucleus	61.21	61.68
Bra022624.1-P	Field mustard	nucleus	62.44	61.12
CDY27030	Canola	nucleus	62.6	60.9
GSMUA_Achr2P15270_001	Banana	nucleus	59.2	55.11
HORVU7Hr1G082230.1	Barley	nucleus	49.46	51.12
Os06t0342500-01	Rice	cytosol	50.39	49.24
TraesCS7A01G333800.1	Wheat	nucleus	50.39	48.8
Zm00001d046033_P001	Maize	nucleus	49.77	48.28
TraesCS7D01G341400.1	Wheat	nucleus	50.08	48.14
KXG20038	Sorghum	nucleus	49.46	47.9
TraesCS7B01G245400.2	Wheat	nucleus	50.08	45.63
Zm00001d037055_P003	Maize	nucleus	48.38	42.3
KRH42077	Soybean	plastid	26.58	29.3
KRH49838	Soybean	plastid	26.12	28.64
KRG93559	Soybean	nucleus	23.49	27.74
KRH18467	Soybean	nucleus	23.03	27.19
KRH40065	Soybean	nucleus	22.57	27.04
KRH58152	Soybean	cytosol	5.26	26.77
KRH01196	Soybean	nucleus	21.95	26.15
KRH52837	Soybean	plastid	27.2	26.04
KRH47290	Soybean	mitochondrion, nucleus	22.41	25.94
KRH58669	Soybean	endoplasmic reticulum, nucleus	24.88	25.93
KRH42565	Soybean	nucleus	25.04	25.92
KRH44614	Soybean	mitochondrion, nucleus	22.26	25.49
KRH21739	Soybean	plastid	28.13	25.45
KRH62129	Soybean	plastid	26.43	25.22
KRH10613	Soybean	plastid	27.36	24.35
KRH39475	Soybean	plastid	22.57	23.9
KRH00973	Soybean	nucleus, plastid	12.83	22.93
KRH40252	Soybean	cytosol, golgi, nucleus, plastid	12.98	21.65
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	14.68	21.44
KRH74462	Soybean	nucleus	20.25	21.27
KRG97000	Soybean	nucleus	14.22	20.63
KRH02776	Soybean	nucleus	12.67	18.81
KRH19104	Soybean	nucleus	12.67	18.81
KRH12329	Soybean	cytosol, nucleus	12.21	17.87
KRH37335	Soybean	cytosol, nucleus	12.21	17.83
KRH67322	Soybean	nucleus	12.83	15.69
KRG95633	Soybean	nucleus	12.67	15.27
KRH71306	Soybean	nucleus	11.59	15.15
KRH32136	Soybean	cytosol	12.36	14.16

Protein Annotations

EntrezGene:100782999	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EMBL:ACUP02003473	EnsemblPlantsGene:GLYMA_06G130700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	UniProt:K7KUU1
InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRH53532	ProteinID:KRH53532	ProteinID:KRH53532.1
PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF134	SMART:SM00322	SUPFAM:SSF54791
UniParc:UPI0002339D03	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:10742487..10747269

Molecular Weight (calculated)

71097.0 Da

IEP (calculated)

5.651

GRAVY (calculated)

-0.414

Length

647 amino acids

Sequence
(BLAST)

001: MERSRSKRNY YYDQDYDSET LARTRPRYNH HYTTAGNQRH RGGGAARHAK TQQDSPLTVT TSYRILCHDL KAGGVIGKSG SIIKSIRQHT GAWINVHELM
101: PGDEERIIEI SDTRRRDPEG RMPSFSPAQE ALLLIHERIL ESDAAFGVAE DDEEYGAGRG GGAGRDRVAT RLVVSRMHVG CLLGKGGKII EQMRMETKTQ
201: IRILPRDHNL PRCVSMSEEI VQVVGDVNAV KNALVIISSR LRESQHRDRS HFHGRVHSPE RFFSPDDDYV PHVTSGSRRS SVDGASFGSR GSNTNSRNNN
301: HPSLSYAMEP GAAPVVDDAQ GFYGEELVFR ILCPVEKVDL IIGESDGIVE FLQSEVGVDV KVTDPVGGSD EQIIIITSEE GPDDELFPAQ EALLHIQTRI
401: VDLVLDKDNT ITTRLVVPSS EIECLDGKDV SLSEIRRLTG ANIQILPRDD LPLCVAKTDE LVQIVGEIKA ARDAVVEVTS RLRSYLYRDF FQRDPIPLPA
501: PLPGAEASSS NNIVPVAETS TTYQNVQTVA AALPPKETGG SSTEVGKQKE SGRRDDVLSG LNRIAVPLVT RSTLEVVIPE YAVPKLIAKS KSKLAQISEL
601: SGANVTLVED RPDVTQKIIQ ISGTPEQAER AQSLLQGFIL STQEDVP

Best Arabidopsis Sequence Match ( AT5G53060.1 )
(BLAST)

001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP

Arabidopsis Description

RCF3RNA-binding KH domain-containing protein RCF3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.