Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003085.1-P | Field mustard | nucleus | 83.13 | 84.82 |
| CDY56908 | Canola | nucleus | 81.9 | 83.96 |
| CDX96185 | Canola | nucleus | 82.36 | 83.78 |
| CDY49453 | Canola | nucleus | 81.9 | 83.18 |
| CDY27030 | Canola | nucleus | 83.74 | 82.11 |
| Bra022624.1-P | Field mustard | nucleus | 82.82 | 81.69 |
| KRH64403 | Soybean | nucleus | 63.5 | 64.29 |
| KRH53532 | Soybean | nucleus | 62.73 | 63.21 |
| VIT_16s0098g01660.t01 | Wine grape | nucleus | 61.2 | 60.36 |
| Solyc03g082980.2.1 | Tomato | nucleus | 59.66 | 58.23 |
| PGSC0003DMT400047665 | Potato | nucleus | 59.36 | 56.41 |
| HORVU7Hr1G082230.1 | Barley | nucleus | 47.55 | 49.52 |
| GSMUA_Achr2P15270_001 | Banana | nucleus | 51.69 | 48.49 |
| TraesCS7A01G333800.1 | Wheat | nucleus | 49.23 | 48.05 |
| TraesCS7D01G341400.1 | Wheat | nucleus | 48.93 | 47.4 |
| Os06t0342500-01 | Rice | cytosol | 47.39 | 46.68 |
| KXG20038 | Sorghum | nucleus | 47.24 | 46.11 |
| Zm00001d046033_P001 | Maize | nucleus | 46.63 | 45.58 |
| TraesCS7B01G245400.2 | Wheat | nucleus | 48.77 | 44.79 |
| Zm00001d037055_P003 | Maize | nucleus | 45.09 | 39.73 |
| AT2G03110.1 | Thale cress | cytosol | 7.52 | 32.03 |
| AT1G14170.3 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 19.48 | 26.51 |
| AT5G15270.2 | Thale cress | nucleus | 21.63 | 25.73 |
| AT4G18375.2 | Thale cress | nucleus | 22.24 | 23.93 |
| AT1G51580.1 | Thale cress | cytosol, plastid | 22.24 | 23.35 |
| AT5G46190.2 | Thale cress | cytosol | 23.47 | 22.21 |
| AT2G22600.1 | Thale cress | mitochondrion | 20.4 | 21.04 |
| AT5G09560.1 | Thale cress | cytosol | 18.71 | 20.33 |
| AT5G64390.3 | Thale cress | nucleus | 25.92 | 19.52 |
| AT4G26000.1 | Thale cress | cytosol | 11.04 | 14.55 |
| AT3G04610.2 | Thale cress | cytosol | 11.5 | 13.0 |
Protein Annotations
| Gene3D:3.30.1370.10 | Gene3D:3.30.310.210 | MapMan:35.1 | EntrezGene:835386 | UniProt:A0A178UIE3 | ProteinID:AED96298.1 |
| ProteinID:ANM68831.1 | ArrayExpress:AT5G53060 | EnsemblPlantsGene:AT5G53060 | RefSeq:AT5G53060 | TAIR:AT5G53060 | RefSeq:AT5G53060-TAIR-G |
| EnsemblPlants:AT5G53060.1 | TAIR:AT5G53060.1 | EMBL:AY062686 | Unigene:At.27262 | ProteinID:BAA97146.1 | EMBL:BT008402 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0006412 | GO:GO:0006950 | GO:GO:0006970 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 |
| GO:GO:0009719 | GO:GO:0009867 | GO:GO:0009987 | GO:GO:0010286 | GO:GO:0010445 | GO:GO:0010468 |
| GO:GO:0016607 | GO:GO:0019538 | GO:GO:0031053 | GO:GO:0040029 | GO:GO:0070878 | GO:GO:1900150 |
| InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | RefSeq:NP_001330551.1 | RefSeq:NP_200118.3 |
| ProteinID:OAO93573.1 | PFAM:PF00013 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PFscan:PS50084 | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF134 | UniProt:Q8W4B1 | SMART:SM00322 |
| SUPFAM:SSF54791 | UniParc:UPI00000A3EA8 | SEG:seg | : | : | : |
Description
RCF3RNA-binding KH domain-containing protein RCF3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B1]
Coordinates
chr5:+:21514896..21518547
Molecular Weight (calculated)
71349.2 Da
IEP (calculated)
5.944
GRAVY (calculated)
-0.478
Length
652 amino acids
Sequence
(BLAST)
(BLAST)
001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.