Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33769 | Canola | nucleus | 89.14 | 88.04 |
| Bra026852.1-P | Field mustard | nucleus | 89.14 | 88.04 |
| CDX81615 | Canola | cytosol | 83.72 | 87.36 |
| Bra019674.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 74.11 | 86.8 |
| CDY39336 | Canola | mitochondrion | 84.76 | 85.84 |
| CDY49107 | Canola | nucleus | 84.55 | 85.26 |
| CDY51849 | Canola | cytosol | 18.16 | 82.08 |
| AT2G03110.1 | Thale cress | cytosol | 22.55 | 70.59 |
| VIT_01s0026g02650.t01 | Wine grape | nucleus | 60.75 | 50.87 |
| PGSC0003DMT400047374 | Potato | nucleus | 53.86 | 48.41 |
| GSMUA_Achr7P11520_001 | Banana | mitochondrion, nucleus | 53.24 | 48.11 |
| Solyc05g007810.2.1 | Tomato | nucleus | 53.24 | 47.93 |
| GSMUA_Achr6P10750_001 | Banana | nucleus | 52.19 | 46.99 |
| Zm00001d029328_P002 | Maize | nucleus | 53.03 | 46.95 |
| KXG39277 | Sorghum | nucleus | 51.98 | 45.94 |
| Os03t0376800-02 | Rice | nucleus | 51.77 | 45.76 |
| TraesCS4A01G150800.1 | Wheat | nucleus | 50.52 | 44.9 |
| AT5G15270.2 | Thale cress | nucleus | 50.1 | 43.8 |
| TraesCS4B01G166500.2 | Wheat | nucleus | 50.52 | 42.98 |
| TraesCS4D01G160700.2 | Wheat | nucleus | 50.31 | 42.81 |
| HORVU4Hr1G049680.1 | Barley | nucleus | 50.52 | 41.58 |
| AT4G18375.2 | Thale cress | nucleus | 28.39 | 22.44 |
| AT5G46190.2 | Thale cress | cytosol | 30.69 | 21.34 |
| AT1G51580.1 | Thale cress | cytosol, plastid | 26.1 | 20.13 |
| AT5G53060.1 | Thale cress | nucleus | 26.51 | 19.48 |
| AT2G22600.1 | Thale cress | mitochondrion | 23.38 | 17.72 |
| AT5G09560.1 | Thale cress | cytosol | 21.92 | 17.5 |
| AT3G04610.2 | Thale cress | cytosol | 19.0 | 15.77 |
| AT5G64390.3 | Thale cress | nucleus | 27.77 | 15.36 |
| AT4G26000.1 | Thale cress | cytosol | 15.87 | 15.35 |
Protein Annotations
| Gene3D:3.30.1370.10 | Gene3D:3.30.310.210 | MapMan:35.1 | EntrezGene:837976 | UniProt:A0A178W8B4 | ProteinID:AAD39302.1 |
| ProteinID:AEE29116.1 | ArrayExpress:AT1G14170 | EnsemblPlantsGene:AT1G14170 | RefSeq:AT1G14170 | TAIR:AT1G14170 | RefSeq:AT1G14170-TAIR-G |
| EnsemblPlants:AT1G14170.3 | TAIR:AT1G14170.3 | Unigene:At.43386 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003729 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009737 | InterPro:IPR036612 |
| InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | RefSeq:NP_001117282.1 | ProteinID:OAP14001.1 | PFAM:PF00013 |
| PO:PO:0000293 | PFscan:PS50084 | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF149 | UniProt:Q9XI71 | SMART:SM00322 |
| SUPFAM:SSF54791 | UniParc:UPI00000A2EDC | SEG:seg | : | : | : |
Description
F7A19.25 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI71]
Coordinates
chr1:-:4843184..4845913
Molecular Weight (calculated)
52543.4 Da
IEP (calculated)
6.200
GRAVY (calculated)
-0.361
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTLRNIHG KRSNLQSEFT GNGGSKRRNL HDETDQNVIA SEDTVYRYLC PVKKTGSIIG KGGEIAKQIR SETKSNMRIN EALPGCEERV VTMYSTNEEL
101: NHFGDDGELV CPALDALFKV HDMVVADADQ DDGTDDDNDL GEKQTVTVRM LVPSDQIGCV IGKGGQVIQN LRNDTNAQIR VIKDHLPACA LTLSHDELLL
201: IIGEPLVVRE ALYQVASLLH DNPSRFQHLL LSSSSSSMHQ PGAMLMSAAL TSSHRNYAVR RDIADAREFC VCFICPAENV GGVIGKGGGF INQIRQETGA
301: TIRVNTSETD DDDCIIFISS KEFYEDQSPA VNAAIRLQQR CSEKVGKDAN DLAISTRLLV SSSQIGCLIG KGGAVISEMR SVTRANIRIL QKEDVPKIAR
401: EDEEMVQITG SPDAAMKALT QVILRLRANS FDMDHGLVLL PTSFPYIPQV TESSSKSKYA KRDDHSKLNS NSKRRNHVS
101: NHFGDDGELV CPALDALFKV HDMVVADADQ DDGTDDDNDL GEKQTVTVRM LVPSDQIGCV IGKGGQVIQN LRNDTNAQIR VIKDHLPACA LTLSHDELLL
201: IIGEPLVVRE ALYQVASLLH DNPSRFQHLL LSSSSSSMHQ PGAMLMSAAL TSSHRNYAVR RDIADAREFC VCFICPAENV GGVIGKGGGF INQIRQETGA
301: TIRVNTSETD DDDCIIFISS KEFYEDQSPA VNAAIRLQQR CSEKVGKDAN DLAISTRLLV SSSQIGCLIG KGGAVISEMR SVTRANIRIL QKEDVPKIAR
401: EDEEMVQITG SPDAAMKALT QVILRLRANS FDMDHGLVLL PTSFPYIPQV TESSSKSKYA KRDDHSKLNS NSKRRNHVS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.