CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51849	Canola	cytosol	21.99	98.11
CDY49107	Canola	nucleus	96.62	96.21
CDX81615	Canola	cytosol	85.41	88.02
CDY33769	Canola	nucleus	89.64	87.42
AT1G14170.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	85.84	84.76
CDY03018	Canola	nucleus	68.71	69.44
CDY45180	Canola	cytosol	60.68	67.85
VIT_01s0026g02650.t01	Wine grape	nucleus	58.99	48.78
PGSC0003DMT400047374	Potato	nucleus	52.64	46.72
Solyc05g007810.2.1	Tomato	nucleus	52.01	46.24
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	51.59	46.04
GSMUA_Achr6P10750_001	Banana	nucleus	51.59	45.86
Zm00001d029328_P002	Maize	nucleus	52.43	45.84
KXG39277	Sorghum	nucleus	52.01	45.39
Os03t0376800-02	Rice	nucleus	51.8	45.2
CDY60930	Canola	nucleus	49.47	43.98
CDX69536	Canola	nucleus	48.63	43.23
TraesCS4A01G150800.1	Wheat	nucleus	49.05	43.04
TraesCS4D01G160700.2	Wheat	nucleus	49.26	41.39
TraesCS4B01G166500.2	Wheat	nucleus	49.26	41.39
HORVU4Hr1G049680.1	Barley	nucleus	49.05	39.86
CDX70604	Canola	nucleus	48.63	39.66
CDX78623	Canola	nucleus	48.63	38.33
CDX99471	Canola	nucleus	14.59	32.09
CDX78846	Canola	nucleus	27.91	23.0
CDX77643	Canola	nucleus	29.81	22.07
CDY33460	Canola	nucleus	29.81	22.0
CDX96185	Canola	nucleus	28.12	20.75
CDY27030	Canola	nucleus	28.96	20.6
CDY49453	Canola	nucleus	27.48	20.25
CDY56908	Canola	nucleus	27.06	20.13
CDY46555	Canola	plastid	22.2	18.07
CDY52947	Canola	plastid	21.56	17.71
CDX84522	Canola	nucleus	27.7	17.68
CDY64706	Canola	nucleus	14.8	17.33
CDY13742	Canola	mitochondrion	22.62	17.09
CDY25609	Canola	cytosol	22.41	17.07
CDX99470	Canola	nucleus	9.73	16.97
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	22.62	16.96
CDX89490	Canola	cytosol	21.56	16.48
CDX89376	Canola	cytosol	14.16	15.76
CDX74180	Canola	cytosol	18.6	15.63
CDY40663	Canola	cytosol	18.6	15.63
CDX92741	Canola	cytosol	15.64	15.01
CDY42768	Canola	cytosol	15.43	14.81
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	14.8	14.58
CDY65294	Canola	cytosol	13.53	14.58

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:A0A078HP15	UniProt:A0A078HP15	EnsemblPlants:CDY39336
ProteinID:CDY39336	ProteinID:CDY39336.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00067763001	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013
PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF149	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0004EF0E71
SEG:seg	:	:	:	:	:

Description

BnaC05g10430DBnaC05g10430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HP15]

Coordinates

chrLK032445:+:247076..249289

Molecular Weight (calculated)

52004.5 Da

IEP (calculated)

5.960

GRAVY (calculated)

-0.396

Length

473 amino acids

Sequence
(BLAST)

001: MASSTVRNVH GKRSSFQSEF TGNGASKRRN LHDETDRNVI GSEDTVYRYL CPVKKTGSII GKGGEIAKQI RSETKSNMRI NEALPGCEER VVTIYSTSDE
101: LNHFGDDGEI VCPALDALFK VHDMIVAEVD EDDDDDLGDK QTVTVRMLVP SDQIGCVIGK GGEVIQNLRN ETNAQIRVIK DNLPACALTL SHDELLQIIG
201: EPLIVREALY QVASLLHDNP SRFQHTLLSS QSTLMHQPST ISHRNHAARR DLADATEFCV CFICPAENVG GVIGKGGGFI NQIRQETGAT IRVTTSESEE
301: DDSIIFISSK EFYEDQSPTV NAAIRLQERC SEKVGKDTND STISTRLLVS SSNIGCLIGI GGAVISEMRS VTRANIRILQ KENVPNIARE DEEMVQITGN
401: PDAAMKALTQ VILRLRANAF DMNHGLVLLP TSFPYISQVS GSSNKPKYAK RDGSKDQDYG RLNLNSKRRN HVS

Best Arabidopsis Sequence Match ( AT1G14170.3 )
(BLAST)

001: MASTLRNIHG KRSNLQSEFT GNGGSKRRNL HDETDQNVIA SEDTVYRYLC PVKKTGSIIG KGGEIAKQIR SETKSNMRIN EALPGCEERV VTMYSTNEEL
101: NHFGDDGELV CPALDALFKV HDMVVADADQ DDGTDDDNDL GEKQTVTVRM LVPSDQIGCV IGKGGQVIQN LRNDTNAQIR VIKDHLPACA LTLSHDELLL
201: IIGEPLVVRE ALYQVASLLH DNPSRFQHLL LSSSSSSMHQ PGAMLMSAAL TSSHRNYAVR RDIADAREFC VCFICPAENV GGVIGKGGGF INQIRQETGA
301: TIRVNTSETD DDDCIIFISS KEFYEDQSPA VNAAIRLQQR CSEKVGKDAN DLAISTRLLV SSSQIGCLIG KGGAVISEMR SVTRANIRIL QKEDVPKIAR
401: EDEEMVQITG SPDAAMKALT QVILRLRANS FDMDHGLVLL PTSFPYIPQV TESSSKSKYA KRDDHSKLNS NSKRRNHVS

Arabidopsis Description

F7A19.25 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI71]
SUBAcon: [plastid,cytosol,nucleus,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.