CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006294.1-P	Field mustard	nucleus	99.17	99.17
CDX70604	Canola	nucleus	95.0	98.28
AT5G15270.2	Thale cress	nucleus	79.0	86.5
CDX69536	Canola	nucleus	74.5	84.02
CDY60930	Canola	nucleus	74.17	83.65
VIT_14s0108g01040.t01	Wine grape	nucleus	57.17	62.59
KRG93559	Soybean	nucleus	56.83	62.23
KRH40065	Soybean	nucleus	55.83	62.04
KRH01196	Soybean	nucleus	55.83	61.69
KRH58152	Soybean	cytosol	13.0	61.42
KRH18467	Soybean	nucleus	56.0	61.31
PGSC0003DMT400003371	Potato	nucleus	53.83	59.7
VIT_09s0002g00070.t01	Wine grape	mitochondrion	12.5	58.59
PGSC0003DMT400064701	Potato	nucleus	53.83	58.2
Solyc02g088120.2.1	Tomato	nucleus	46.33	52.95
Solyc02g067210.2.1	Tomato	nucleus	53.5	52.11
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	20.17	51.27
CDX81615	Canola	cytosol	39.0	50.98
CDY33769	Canola	nucleus	40.83	50.52
CDY49107	Canola	nucleus	38.67	48.84
CDY39336	Canola	mitochondrion	38.33	48.63
VIT_14s0006g00030.t01	Wine grape	cytosol	22.33	47.35
CDY03018	Canola	nucleus	36.83	47.22
CDY45180	Canola	cytosol	32.5	46.1
CDY51849	Canola	cytosol	7.0	39.62
CDX99471	Canola	nucleus	11.67	32.56
CDX78846	Canola	nucleus	24.33	25.44
CDY33460	Canola	nucleus	26.17	24.49
CDX77643	Canola	nucleus	25.83	24.26
CDY56908	Canola	nucleus	23.0	21.7
CDX96185	Canola	nucleus	23.0	21.53
CDY46555	Canola	plastid	20.83	21.51
CDY52947	Canola	plastid	20.5	21.35
CDY49453	Canola	nucleus	22.83	21.34
CDY27030	Canola	nucleus	23.0	20.75
CDX99470	Canola	nucleus	9.33	20.66
CDY25609	Canola	cytosol	21.17	20.45
CDY13742	Canola	mitochondrion	21.33	20.45
CDX84522	Canola	nucleus	25.0	20.24
CDX89490	Canola	cytosol	20.83	20.19
CDX89376	Canola	cytosol	14.17	20.0
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	20.83	19.81
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	15.5	19.38
CDY65294	Canola	cytosol	14.0	19.13
CDY64706	Canola	nucleus	12.5	18.56
CDY42768	Canola	cytosol	15.17	18.46
CDX92741	Canola	cytosol	15.17	18.46
CDY40663	Canola	cytosol	15.83	16.87
CDX74180	Canola	cytosol	15.83	16.87

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:A0A078CU20	EnsemblPlants:CDX78623	ProteinID:CDX78623
ProteinID:CDX78623.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00130037001
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF151	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0004EE038F	SEG:seg

Description

BnaA03g05350D

Coordinates

chrLK031815:+:1566091..1569632

Molecular Weight (calculated)

65298.2 Da

IEP (calculated)

7.546

GRAVY (calculated)

-0.480

Length

600 amino acids

Sequence
(BLAST)

001: MSPDHRDSHR KRSRPHSDDD DNGGSKRRHR GGDDRDSHTI DRDDTVFRYL CPVKKIGSVI GRGGDIVKQL RMETRAKIKI GEAIPGCDER VITIYSASDE
101: TNAFGDDGEK SLSPAQDALF KIHDRVAADD ARRSEDSSEG EQQATAKLLV PSDQIGCILG RGGQIVQNIR SETGAQIRII KDRNMPLCAL SSDELIQISG
201: EVLLVKKALH QIAARLHENP SRTQNLLSSA VAGGYPSGSL VSHAGGPRIV GIAPLMGSYG GYKSDAGDFG RPLYEARRNE PPATDFYIRL VSPVENIASV
301: IGKGGALINQ LRQETRATIK VDSARTEGND CLITISAREV FDDAYSPTIE AAMRLQPKCS EKIERDSGLV SFTTRILVPS SRIGCLLGKG GAIITEMRRM
401: TRANIRVLGK ENLPKVASED DEMVQISGEL DVAKEALLQI TSRLRANVFD REGAVSAIMP VLPYVPVAPD TGDRLDYDRR DSRRPERGNH YPGGYGSSGL
501: SSEYSPYGAP VGGSSSTPYG VYGGGYASGR SGSSGRCTTH TCYLLPYNSL VVDPYHGFCH TGYPAIHQPI DAETMITRSY WWVMKKCEIL KPDAYPTAHS

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.