CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78623	Canola	nucleus	98.28	95.0
AT5G15270.2	Thale cress	nucleus	81.9	86.68
CDX69536	Canola	nucleus	77.24	84.21
CDY60930	Canola	nucleus	77.07	84.02
VIT_14s0108g01040.t01	Wine grape	nucleus	59.14	62.59
KRG93559	Soybean	nucleus	58.97	62.41
KRH40065	Soybean	nucleus	57.59	61.85
KRH01196	Soybean	nucleus	57.59	61.51
KRH18467	Soybean	nucleus	58.1	61.5
KRH58152	Soybean	cytosol	13.45	61.42
VIT_09s0002g00070.t01	Wine grape	mitochondrion	13.45	60.94
PGSC0003DMT400003371	Potato	nucleus	55.52	59.52
PGSC0003DMT400064701	Potato	nucleus	55.34	57.84
Solyc02g088120.2.1	Tomato	nucleus	47.76	52.76
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	21.21	52.12
Solyc02g067210.2.1	Tomato	nucleus	55.0	51.79
CDX81615	Canola	cytosol	40.34	50.98
CDY33769	Canola	nucleus	42.24	50.52
CDY49107	Canola	nucleus	40.0	48.84
CDY39336	Canola	mitochondrion	39.66	48.63
CDY03018	Canola	nucleus	37.93	47.01
VIT_14s0006g00030.t01	Wine grape	cytosol	22.93	47.0
CDY45180	Canola	cytosol	33.45	45.86
CDY51849	Canola	cytosol	7.24	39.62
CDX99471	Canola	nucleus	11.9	32.09
CDX78846	Canola	nucleus	24.66	24.91
CDY33460	Canola	nucleus	26.72	24.18
CDX77643	Canola	nucleus	26.38	23.94
CDY46555	Canola	plastid	22.07	22.03
CDY52947	Canola	plastid	21.55	21.7
CDY56908	Canola	nucleus	23.79	21.7
CDX96185	Canola	nucleus	23.79	21.53
CDY49453	Canola	nucleus	23.62	21.34
CDY27030	Canola	nucleus	23.79	20.75
CDY13742	Canola	mitochondrion	22.24	20.61
CDY25609	Canola	cytosol	21.9	20.45
CDX89490	Canola	cytosol	21.72	20.36
CDX99470	Canola	nucleus	9.48	20.3
CDX84522	Canola	nucleus	25.69	20.11
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	21.72	19.97
CDX89376	Canola	cytosol	14.48	19.76
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	15.86	19.17
CDY65294	Canola	cytosol	14.31	18.91
CDY64706	Canola	nucleus	13.1	18.81
CDY42768	Canola	cytosol	15.52	18.26
CDX92741	Canola	cytosol	15.52	18.26
CDY40663	Canola	cytosol	16.55	17.05
CDX74180	Canola	cytosol	16.55	17.05

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:A0A078C360	EnsemblPlants:CDX70604	ProteinID:CDX70604
ProteinID:CDX70604.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00140448001
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF151	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0004EEDED9	SEG:seg

Description

BnaC03g06880D

Coordinates

chrLK031791:+:1194471..1197959

Molecular Weight (calculated)

62922.4 Da

IEP (calculated)

7.703

GRAVY (calculated)

-0.487

Length

580 amino acids

Sequence
(BLAST)

001: MSPDHRDSHR KRSRPHSDDD DNGGSKRRPR GGDDRDSHAI DRDDTVFRYL CPVKKIGSVI GRGGDIVKQL RMETRAKIKI GEAIPGCDER VITIYSASDE
101: TNAFGDDGEK SLSPAQDALF KIHDRVAADD ARRSEDSSEG EQQATAKLLV PSDQIGCILG RGGQIVQNIR SETGAQIRII KDRNMPLCAL SSDELIQISG
201: EVLLVKKALH QIASRLHENP SRTQNLLSSA VAGGYPSGSL MSHAAGPRIV GIAPLMGSYG GYKGDAGDFA RPLYETRRNE PPATDFYIRL VSPVENIASV
301: IGKGGALINQ LRQETRATIK VDSARTEGND CLVTISAREV FDDAYSPTIE AAMRLQPKCS EKIERDSGLV SFTTRILVPS SRIGCLLGKG GAIITEMRRM
401: TRANIRVLGK ENLPKVASED DEMVQISGEL DVAKEALLQI TSRLRANVFD REGAVSAIMP VLPYVPVAPD AGDRLDYDRR DSRRPERGNH YPGGYGSSGL
501: SSEYSPYGAP VGGSSSTPYG VYGGGYASGR SGSSGRCTTH TCCPAIHQPI DAETMITRSY WWVMKKCEIL KPDAYPTAHS

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.