CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99470	Canola	nucleus	44.95	95.2
Bra013302.1-P	Field mustard	nucleus	96.86	94.88
CDX99471	Canola	nucleus	34.84	93.02
AT4G18375.2	Thale cress	nucleus	67.42	63.86
CDX77643	Canola	nucleus	65.16	58.53
CDY33460	Canola	nucleus	65.16	58.35
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	55.05	50.72
KRH42565	Soybean	nucleus	53.48	49.12
KRH58669	Soybean	endoplasmic reticulum, nucleus	52.96	48.95
PGSC0003DMT400076798	Potato	nucleus	51.74	47.9
Solyc08g048500.2.1	Tomato	nucleus	51.22	47.65
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	48.95	43.16
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	50.17	41.68
OQU80050	Sorghum	nucleus	45.64	41.65
Zm00001d024270_P001	Maize	nucleus	45.47	41.3
Zm00001d049390_P001	Maize	nucleus	44.77	40.73
TraesCS3A01G512500.1	Wheat	nucleus	44.6	40.57
TraesCS3B01G580700.1	Wheat	nucleus	44.25	40.25
HORVU5Hr1G121900.1	Barley	nucleus	44.25	40.19
TraesCS3D01G519700.1	Wheat	nucleus	44.08	40.1
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	44.08	40.03
TraesCS5D01G538200.3	Wheat	nucleus	43.38	39.52
TraesCS5B01G551800.1	Wheat	nucleus	43.21	39.3
TraesCS4A01G333900.1	Wheat	nucleus	43.21	39.24
CDY03018	Canola	nucleus	23.34	28.63
CDY49107	Canola	nucleus	23.52	28.42
CDX81615	Canola	cytosol	22.47	28.1
CDY39336	Canola	mitochondrion	23.0	27.91
CDY60930	Canola	nucleus	25.78	27.82
CDX69536	Canola	nucleus	25.44	27.44
CDY33769	Canola	nucleus	23.17	27.42
CDY45180	Canola	cytosol	19.86	26.95
CDX70604	Canola	nucleus	24.91	24.66
CDX78623	Canola	nucleus	25.44	24.33
CDX96185	Canola	nucleus	25.26	22.62
CDY52947	Canola	plastid	22.47	22.4
CDY56908	Canola	nucleus	24.74	22.33
CDY49453	Canola	nucleus	24.91	22.27
CDX84522	Canola	nucleus	28.75	22.27
CDY46555	Canola	plastid	22.47	22.2
CDY27030	Canola	nucleus	25.61	22.11
CDY25609	Canola	cytosol	22.82	21.09
CDX89490	Canola	cytosol	22.13	20.52
CDY13742	Canola	mitochondrion	22.13	20.29
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	22.3	20.29
CDX92741	Canola	cytosol	14.98	17.44
CDY42768	Canola	cytosol	14.98	17.44
CDY64706	Canola	nucleus	12.2	17.33
CDX74180	Canola	cytosol	16.9	17.23
CDY51849	Canola	cytosol	3.14	16.98
CDX89376	Canola	cytosol	12.54	16.94
CDY40663	Canola	cytosol	16.55	16.87
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	13.94	16.67
CDY65294	Canola	cytosol	12.72	16.63

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:A0A078CNQ6	EnsemblPlants:CDX78846	ProteinID:CDX78846
ProteinID:CDX78846.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00131321001
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF137	SMART:SM00322	SUPFAM:SSF54791	TMHMM:TMhelix	UniParc:UPI0004EE715B
SEG:seg	:	:	:	:	:

Description

BnaA01g09130D

Coordinates

chrLK031816:+:414444..417116

Molecular Weight (calculated)

61761.0 Da

IEP (calculated)

6.675

GRAVY (calculated)

-0.307

Length

574 amino acids

Sequence
(BLAST)

001: MSDRKKRKSN HNDNNNQRRR FSNDNHETTN KEDLVIYRIL CPVGIIGGVI GKSGKVINAI RDTTKAKVKV FDQSPGCTQR VITIYSSVKE KVDVTETETE
101: PLCCAQDALL RVHDTIVSCV ESAAAGEKNG TKKECRLLVP SSQASGVIGK AGAVIKSIRR RTGASVEVDS KDVSDPSHAC ALDFDNVVLI SGEHESVKKA
201: LYAVSATMYK TNPREQIPLD STTVQETPAS VVIPTEVSSY VYQRAGVPTF VNASEFQGYA ETTSPAVSHG FGGSSGSKEL VLKVLCPVSG IGRVIGREGS
301: TINGIREASG SRIEVNKANH GDDECVIIVT ATESPDDMKS MAVEAILLLQ EKINEEDEET VKMQLLVPSK VIGCVIGKSG SVVTQIRKRT NASIRISKGN
401: NDDLVEVSGE VSSVRDALIQ IVLRLREDVL GDRGSVSARN PPPARSDHSE YASVDFDQRR ETGESSLGMV SSDRFYGYES SFPARDHGLV SVGPYSYGGL
501: YQSSALEILV PANAVNKVIG KGGGNLENIR RISGAMVEVS DSKTSHGDRI ALVSGTPEQM RSAENLFQAF IMST

Best Arabidopsis Sequence Match ( AT4G18375.2 )
(BLAST)

001: MVERKKRKQI QRNNSESNRN QKRRISHDKI NRDELVVYRI LCPIDVVGGV IGKSGKVINA IRHNTKAKIK VFDQLHGCSQ RVITIYCSVK EKQEEIGFTK
101: SENEPLCCAQ DALLKVYDAI VASDEENNTK TNVDRDDNKE CRLLVPFSQS SSLIGKAGEN IKRIRRRTRA SVKVVSKDVS DPSHVCAMEY DNVVVISGEP
201: ESVKQALFAV SAIMYKINPR ENIPLDSTSQ DVPAASVIVP SDLSNSVYPQ TGFYSNQDHI LQQGAGVPSY FNALSVSDFQ GYAETAANPV PVFASSLPVT
301: HGFGGSSRSE ELVFKVLCPL CNIMRVIGKG GSTIKRIREA SGSCIEVNDS RTKCGDDECV IIVTATESPD DMKSMAVEAV LLLQEYINDE DAENVKMQLL
401: VSSKVIGCVI GKSGSVINEI RKRTNANICI SKGKKDDLVE VSGEVSSVRD ALIQIVLRLR EDVLGDKDSV ATRKPPARTD NCSFLSGSSN AGYTLPSFMS
501: SMASTSGFHG YGSFPAGDNV LGSTGPYSYG RLPSSSALEI LIPAHAMSKV MGKGGGNLEN IRRISGAMIE ISASKTSHGD HIALLSGTLE QMRCAENLVQ
601: AFVMST

Arabidopsis Description

KH domain-containing protein At4g18375 [Source:UniProtKB/Swiss-Prot;Acc:P58223]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.