Factsheet for Bra013302.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78846	Canola	nucleus	94.88	96.86
CDX99470	Canola	nucleus	44.2	95.57
CDX99471	Canola	nucleus	34.13	93.02
AT4G18375.2	Thale cress	nucleus	66.89	64.69
Bra025032.1-P	Field mustard	nucleus	64.51	58.51
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	54.1	50.88
KRH42565	Soybean	nucleus	53.24	49.92
KRH58669	Soybean	endoplasmic reticulum, nucleus	52.73	49.76
Solyc08g048500.2.1	Tomato	nucleus	50.85	48.3
PGSC0003DMT400076798	Potato	nucleus	51.02	48.23
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	48.12	43.32
OQU80050	Sorghum	nucleus	45.22	42.13
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	49.32	41.82
Zm00001d024270_P001	Maize	nucleus	44.88	41.61
Zm00001d049390_P001	Maize	nucleus	44.03	40.89
TraesCS3A01G512500.1	Wheat	nucleus	44.03	40.89
TraesCS3B01G580700.1	Wheat	nucleus	43.69	40.57
TraesCS3D01G519700.1	Wheat	nucleus	43.52	40.41
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	43.52	40.35
HORVU5Hr1G121900.1	Barley	nucleus	43.52	40.35
TraesCS5D01G538200.3	Wheat	nucleus	42.66	39.68
TraesCS5B01G551800.1	Wheat	nucleus	42.49	39.46
TraesCS4A01G333900.1	Wheat	nucleus	42.49	39.4
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	20.82	29.83
Bra008709.1-P	Field mustard	nucleus	24.91	28.24
Bra026852.1-P	Field mustard	nucleus	22.7	27.42
Bra024789.1-P	Field mustard	cytosol	16.55	25.8
Bra001111.1-P	Field mustard	cytosol	16.21	24.36
Bra006294.1-P	Field mustard	nucleus	24.74	24.17
Bra003085.1-P	Field mustard	nucleus	24.23	22.22
Bra022624.1-P	Field mustard	nucleus	24.57	21.79
Bra014290.1-P	Field mustard	plastid	21.16	21.34
Bra030226.1-P	Field mustard	plastid	22.53	21.29
Bra038508.1-P	Field mustard	cytosol, plastid	22.35	20.5
Bra024292.1-P	Field mustard	nucleus	28.84	19.72
Bra019133.1-P	Field mustard	cytosol	13.31	19.6
Bra013940.1-P	Field mustard	cytosol	12.29	16.94

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EnsemblPlantsGene:Bra013302	EnsemblPlants:Bra013302.1	EnsemblPlants:Bra013302.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	UniProt:M4D9Z2	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288
PANTHER:PTHR10288:SF137	SMART:SM00322	SUPFAM:SSF54791	TMHMM:TMhelix	UniParc:UPI0002546086	SEG:seg

Description

AT5G46190 (E=4e-109) | KH domain-containing protein

Coordinates

chrA01:+:4860216..4862489

Molecular Weight (calculated)

63004.4 Da

IEP (calculated)

6.273

GRAVY (calculated)

-0.301

Length

586 amino acids

Sequence
(BLAST)

001: MSDRKKRKSN HNDNNNQRRR ISNDNNETTN KEDLVIYRIL CPVGIIGGVI GKSGKVINAI RDTTKAKVKV FDQSPGCTQR VITIYSSVKE KVDVTETETE
101: PLCCAQDALL RVHDTIVSCV ESAGGGEKNG NKKEECRLLV PSSQASAVIG KAGAVIKSIR RRTGASVEVD SKDVSDPSHA CALDFDNVVL ISGEHESVKK
201: ALYAVSATMY KTNPREQIPL DSTTVQETPA SVVIPTEVSS YVYQRAGVPT FVNASEFQGY AETTSPAVSH GFGGSSGSKE LVLKVLCPVS SIGRVIGREG
301: STINGMREAS GSRIEVNKAN HGDDECVIIV TATESPDDMK SMAVEAILLL QEKINDDDEE TVKMQLIVPS KAIGCVIGKS GSVITQIRKR TNASIRISKG
401: NNDDLVEVSG EVSSVRDALI QIVLRLREDV LEDRGSVSAR NPPSRSDHSG FTLPPFVSSV PEYASVDFDQ RRETGESSLG MVSSDRFYGY ESSFPARDHG
501: LVSVGPYSYG GLYQSSALEI LVPASAVSKV IGKGGGNLEN IRRISGAMVE VSDSKTSHGD RIALVSGTPE QMRSAENLFQ AFIMST

Best Arabidopsis Sequence Match ( AT4G18375.2 )
(BLAST)

001: MVERKKRKQI QRNNSESNRN QKRRISHDKI NRDELVVYRI LCPIDVVGGV IGKSGKVINA IRHNTKAKIK VFDQLHGCSQ RVITIYCSVK EKQEEIGFTK
101: SENEPLCCAQ DALLKVYDAI VASDEENNTK TNVDRDDNKE CRLLVPFSQS SSLIGKAGEN IKRIRRRTRA SVKVVSKDVS DPSHVCAMEY DNVVVISGEP
201: ESVKQALFAV SAIMYKINPR ENIPLDSTSQ DVPAASVIVP SDLSNSVYPQ TGFYSNQDHI LQQGAGVPSY FNALSVSDFQ GYAETAANPV PVFASSLPVT
301: HGFGGSSRSE ELVFKVLCPL CNIMRVIGKG GSTIKRIREA SGSCIEVNDS RTKCGDDECV IIVTATESPD DMKSMAVEAV LLLQEYINDE DAENVKMQLL
401: VSSKVIGCVI GKSGSVINEI RKRTNANICI SKGKKDDLVE VSGEVSSVRD ALIQIVLRLR EDVLGDKDSV ATRKPPARTD NCSFLSGSSN AGYTLPSFMS
501: SMASTSGFHG YGSFPAGDNV LGSTGPYSYG RLPSSSALEI LIPAHAMSKV MGKGGGNLEN IRRISGAMIE ISASKTSHGD HIALLSGTLE QMRCAENLVQ
601: AFVMST

Arabidopsis Description

KH domain-containing protein At4g18375 [Source:UniProtKB/Swiss-Prot;Acc:P58223]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.